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The map label for this gene is dcd

Identifier: 124028021

GI number: 124028021

Start: 1170552

End: 1171082

Strand: Direct

Name: dcd

Synonym: Hbut_1159

Alternate gene names: 124028021

Gene position: 1170552-1171082 (Clockwise)

Preceding gene: 124028020

Following gene: 124028022

Centisome position: 70.21

GC content: 55.37

Gene sequence:

>531_bases
TTGATACTCTCAGACCGCGACATAGCATGGTACATCGAGAAGGGCCTCCTCCGGATAGACCCACTACTAGACGACACGAT
AAGGGAGAACGGCGTGGACCTGCGCCTGGATAGCGAGTTCTGCCGCTTCAACCCAGACGCCCCCGAGCTAGACACGAGAA
AACCATTCAACAGGGAAATCTACTACAACTGCGTGAAGGTAGACCCCGAGCAGGGCTTCACAGTAAAACCCTACGAGCAC
GTACTAGCCACCACAATGGAGACAGTCTGCCTACCCGACGACCTCGTAGGCCTAGTAAACGTGAGAAGCACCTTCGCCAG
ATACGGCATATTCGTCCCCCCAACCGTAATAGACGCCGGGTTCTGCGGACAGATAACAATCGAGATCATAGGCTCCGCCT
ACCCCGTAAGACTATACCCGGGCCAACGCTTCCTCCACGTAGTCTTCGTCCGCACAACAAGCCCAGTAGCAAACCCCTAC
CACGGCAAATACCAGGGACAAAGAGGCGTAACACCACCACGACCAGACTAG

Upstream 100 bases:

>100_bases
GCTGGCGTGCTGCCACGTAAAAGCCTGGAGCTGCAGTAACACCAGGCCAGCCACCAAGTCAAGCCCGGCGGGAGGAGACT
AGCCCCGGGATGGCCCGGCC

Downstream 100 bases:

>100_bases
ACAAAGCGAAGCTTCGAAACAATCCCATACATAATGCCTAGCTGATTTCCCGCAATTACACTCAGTTTTGCAAATCGCAG
GCACAAACATGATCAAATAT

Product: deoxycytidine triphosphate deaminase

Products: NA

Alternate protein names: dCTP deaminase

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MILSDRDIAWYIEKGLLRIDPLLDDTIRENGVDLRLDSEFCRFNPDAPELDTRKPFNREIYYNCVKVDPEQGFTVKPYEH
VLATTMETVCLPDDLVGLVNVRSTFARYGIFVPPTVIDAGFCGQITIEIIGSAYPVRLYPGQRFLHVVFVRTTSPVANPY
HGKYQGQRGVTPPRPD

Sequences:

>Translated_176_residues
MILSDRDIAWYIEKGLLRIDPLLDDTIRENGVDLRLDSEFCRFNPDAPELDTRKPFNREIYYNCVKVDPEQGFTVKPYEH
VLATTMETVCLPDDLVGLVNVRSTFARYGIFVPPTVIDAGFCGQITIEIIGSAYPVRLYPGQRFLHVVFVRTTSPVANPY
HGKYQGQRGVTPPRPD
>Mature_176_residues
MILSDRDIAWYIEKGLLRIDPLLDDTIRENGVDLRLDSEFCRFNPDAPELDTRKPFNREIYYNCVKVDPEQGFTVKPYEH
VLATTMETVCLPDDLVGLVNVRSTFARYGIFVPPTVIDAGFCGQITIEIIGSAYPVRLYPGQRFLHVVFVRTTSPVANPY
HGKYQGQRGVTPPRPD

Specific function: De novo synthesis of thymidylate. [C]

COG id: COG0717

COG function: function code F; Deoxycytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dCTP deaminase family

Homologues:

Organism=Escherichia coli, GI1788379, Length=192, Percent_Identity=32.2916666666667, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DCD_HYPBU (A2BLY5)

Other databases:

- EMBL:   CP000493
- RefSeq:   YP_001013341.1
- ProteinModelPortal:   A2BLY5
- SMR:   A2BLY5
- STRING:   A2BLY5
- GeneID:   4782584
- GenomeReviews:   CP000493_GR
- KEGG:   hbu:Hbut_1159
- eggNOG:   arNOG18251
- HOGENOM:   HBG553199
- OMA:   GSFAWVD
- PhylomeDB:   A2BLY5
- ProtClustDB:   PRK00416
- BioCyc:   HBUT415426:HBUT_1159-MONOMER
- HAMAP:   MF_00146
- InterPro:   IPR011962
- InterPro:   IPR008180
- TIGRFAMs:   TIGR02274

Pfam domain/function: PF00692 dUTPase

EC number: =3.5.4.13

Molecular weight: Translated: 20022; Mature: 20022

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILSDRDIAWYIEKGLLRIDPLLDDTIRENGVDLRLDSEFCRFNPDAPELDTRKPFNREI
CCCCCCCEEEEEECCCEEECCHHHHHHHHCCCEEEECCHHHCCCCCCCCCCCCCCCCCEE
YYNCVKVDPEQGFTVKPYEHVLATTMETVCLPDDLVGLVNVRSTFARYGIFVPPTVIDAG
EEEEEEECCCCCCEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCC
FCGQITIEIIGSAYPVRLYPGQRFLHVVFVRTTSPVANPYHGKYQGQRGVTPPRPD
CCCEEEEEEECCCCEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MILSDRDIAWYIEKGLLRIDPLLDDTIRENGVDLRLDSEFCRFNPDAPELDTRKPFNREI
CCCCCCCEEEEEECCCEEECCHHHHHHHHCCCEEEECCHHHCCCCCCCCCCCCCCCCCEE
YYNCVKVDPEQGFTVKPYEHVLATTMETVCLPDDLVGLVNVRSTFARYGIFVPPTVIDAG
EEEEEEECCCCCCEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCC
FCGQITIEIIGSAYPVRLYPGQRFLHVVFVRTTSPVANPYHGKYQGQRGVTPPRPD
CCCEEEEEEECCCCEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA