Click here to switch to the map view.

The map label for this gene is lhr [C]

Identifier: 124027936

GI number: 124027936

Start: 1085150

End: 1087969

Strand: Reverse

Name: lhr [C]

Synonym: Hbut_1068

Alternate gene names: 124027936

Gene position: 1087969-1085150 (Counterclockwise)

Preceding gene: 124027937

Following gene: 124027935

Centisome position: 65.26

GC content: 57.94

Gene sequence:

>2820_bases
TTGGCAAGGCATGGAAGGATTGCATCGCTGCTAAGGAGCCTGGGCTACGAGGTTCTCGTGTGGGAGGAGCCTCCCGAGGA
GCCCGAGCAGTCCGACAAGACTTTCTCGGATATAGTCCCGCGACTCTCCGGTCATGAAAAGGCCAGGCTGAAACTCTACC
GCCACCAGCTAGAGGCCATAGAGGCTCTCGAGCAGGGTAGGAACGTAATACTAACGGCACGCACGGGTTCCGGAAAAACG
GAGGCGTGGGCTCTCGCAGCCCTCCGCCACGGCTGGAGAGTGCTCGCCGTCTACCCTACCCTGGCACTTGCAGCTGACCA
GATAAGGAGGCTCGAAGAATACTATCGCGCCGCCGGCTACCGGGATGCGGTAGTGCGTATTGATAGGCCTAGTATCGAGA
AGCGGGGGCGACGCGGCGACGAGCTGCTACGCCAGCTCTCCAAGGCTATGGTTGTAGTTACAAACCCAGCATTCCTCCTC
GCGGAGATGAAGAGGCTAGCTATGCACCCTAACCGCGCCCTCCTAGAGGACTTCCTTACGTCGGTAGACCTCATGGTTTT
CGACGAGCTAGACTTCTATGGGCCCCGCGGTGCTCATCTCCTCCTAGCGATAGTGGAGCTGGTCTCAAAGCACTTAGCTT
CCAAGTCTCCCCGAGTAGTAGTGCTCTCAGCTACCCTAGGCAACCCTGGCGAGTTGGCGAAACTCCTCACGGACATTACG
GGTAGGGATACAAGCATCATAGAGGGTAAGCCGTTCAAGACACGGAATAGGACCATAATAGTCCTAGGTAAGGGGTTCGA
GGCGCTACGGGACTATGTGAGGGCTTACGCGTCAGTCATAGCCTCTAGGGCTCCATGGATACTAGACATTGTGGGGGACG
ACGAAGAGTTTAGGGAGCACATGTACGAGATATACGAGGCTCTGGAAGCCATAGGGCTTAGACCGCCCAGGCCCGGCATG
GACCCAGTGGAGATCCTCCAGGCCGTGTTGGATGCCTCTGAGCCAGGCAGGGTTACCCTGGTGTTCACCAGGAGTATCCG
GATGGCTGAGAGGCTCTACCGGAGCCTTCTTGAAAGGCTTCCCCCCGGGAAGCGTGGCCTAGTCGGCATACACCATCACC
TCGTGTCGAAGGAGAAACGCGAACAGCTGGAGGCGGCGGCGAGGGAGGGCCGGGTAGCGCTGATAATTACTGTGAGGACG
CTAGCCCAGGGAATAGACATAGGTACGGTGTACCGGGTCGTACATGTAGGGCTTCCTGCCGACCTGAGAGAGTACATGCA
GAGGGAGGGCCGCAAGGGCCGCCGGAAAGAACTAGGCGTAACGGAGTCCATAGTTATTCCCTCCGGTCTCTGGGATAGAA
AGCTCCTCGAGACCGGTAGTAGTGCGCTACGCGAGTGGCTTGGCTTGCCCCTCGAGAAGCTATACATAAACCCGTCAAAC
GCCTACGCTACGATATTCAAGGCTATGTGGAGGCTTCTCCGCGGTCTAGAGCTGAGCAGTGATGAAGAGAAGCTTCTTCG
TAAATTCGGTTTCGTAGAGGAGTACACTACTGCGCTCGGCGAGCGGAGGCTAACGCTGAGCAAGAGGGGTAAGGCGTTTT
GGAACGACATAGGCTTCTACGAGCACGGCCCACCGTATGGGTATCGGAAGGTACTCGTGCGTGGCGACCGCGAAATAGTA
CTCCGCGGCGAGGAAGCATCGCTCCGCGATGTTGTGGAGAAGTATCAGCCGGGAGCCTTCGACCCAATGACGGAGGCTCT
AGTGGTGCGTGTCGAGCCGCGGGAGTACCGTGTCTACGAGGAGCCCGTTGAGGATGCAGTAGCTGGCCACGAGTGGTTGG
CGAGGGCGGCAGCTAGGTACGAGGATATTAAAAAGGCATGGGGCGAGGCACCAAGGCTAGCTGATGACATCCGCTATGGC
AGAGTTACAGCAGCCATAGTGCTCAATGTTTCGGCACCAACGTCTGGCTTTGGTGAGCTTGTAGAGGAGCCTATCGAGGT
CGAGTGGCTCGTTGAGAGTGCAAGGCCGAGGCTGTCGAGGACACCTAATGGTGTGAGGGTCTACCATGAGGTTGCAAGTA
TAGAGCTTAACGCGCCGGTGGCTGGCCGCTACCGCGACTACACCTATGGCTACGTCTTCGAGGCACCGGGCACCCTCCGG
GCCGAGGACTTGAGGCTCGGACTAGCCCTACTCATAGTCTACCTCCGGCTCGACGAGCGCTACTCGATACCCCTAGGCCT
CCTCCGCTACCGCGTCGTGTCAGCTGGACCTATCAAACTCGTACACCTCTGGGAGAGGGAGGCGGCAGGGCTTCTTGACA
AGCTTGACTGGCTGGAGGTGGCTGAGAATGTTGAGAGATACGAGCTGCCCGGCATAGCGCTCCCCCTCATAGCTGCTGTT
GACCCTGTGTCTGCGCTGAGGATTATGCGTGGCGAGGTAAGCCTCGAGAGCGCGAAGAGGCTGGCAGCCCAGGTTGCAAG
GGTTATTGCTGGAAGCGAAGTGCTACGTGCCGGCGAGGTTGTGGTCGAGTACCCGAGGCCGAGTAGGAGCCACGGGATAA
CCAGTATAGCAGCCGTATACGAAACCATAGACTCCAGTGCTGGCTCAGCTGTTGTGGCTGCTGTGGCTAGCTTTGATGGC
GAGGAACCCCGAATAGACGTTATCAAGGGCAGGGTTTCGCTCGATTCGGCGTCGGAGATAGCTCACCGAGTACTAGCCCA
CATTGACCGTGCCCTTTCTCAGGGCATGACGATATACTACTATGGTAGGGAGCAGCGCGACCTCCTCATAGAATGCTTGC
GGGAAGCTACATGGGTGTAA

Upstream 100 bases:

>100_bases
TGGCCTGTTGTCCTAGACCCTCCTTTGGCCACGGGTTTTCGCACGGGTAGGGTTCATATGGTATTCAAGCCTAGGAGAGC
CTAGGGGCATGAAGTAGGCC

Downstream 100 bases:

>100_bases
TGGCTCTAAGGGCTGCTGAGCAAGATGGTCGGCTGCGTGACGCGGCGGAGGAGGCTGAGAAGCGTGTGGGTCCCCTGCCG
CTGCTCACGCTAGTTGAGCC

Product: helicase

Products: NA

Alternate protein names: DEAD/DEAH Box Helicase Domain Protein; ATP-Dependent Helicase; Helicase; ATP-Dependent RNA Helicase; Helicase Family Protein; DEAD/DEAH Box Helicase-Like Protein; ATP-Dependent DNA Helicase Lhr; Dead/Deah Box Helicase; DEAD/DEAH Box Helicase-Like

Number of amino acids: Translated: 939; Mature: 938

Protein sequence:

>939_residues
MARHGRIASLLRSLGYEVLVWEEPPEEPEQSDKTFSDIVPRLSGHEKARLKLYRHQLEAIEALEQGRNVILTARTGSGKT
EAWALAALRHGWRVLAVYPTLALAADQIRRLEEYYRAAGYRDAVVRIDRPSIEKRGRRGDELLRQLSKAMVVVTNPAFLL
AEMKRLAMHPNRALLEDFLTSVDLMVFDELDFYGPRGAHLLLAIVELVSKHLASKSPRVVVLSATLGNPGELAKLLTDIT
GRDTSIIEGKPFKTRNRTIIVLGKGFEALRDYVRAYASVIASRAPWILDIVGDDEEFREHMYEIYEALEAIGLRPPRPGM
DPVEILQAVLDASEPGRVTLVFTRSIRMAERLYRSLLERLPPGKRGLVGIHHHLVSKEKREQLEAAAREGRVALIITVRT
LAQGIDIGTVYRVVHVGLPADLREYMQREGRKGRRKELGVTESIVIPSGLWDRKLLETGSSALREWLGLPLEKLYINPSN
AYATIFKAMWRLLRGLELSSDEEKLLRKFGFVEEYTTALGERRLTLSKRGKAFWNDIGFYEHGPPYGYRKVLVRGDREIV
LRGEEASLRDVVEKYQPGAFDPMTEALVVRVEPREYRVYEEPVEDAVAGHEWLARAAARYEDIKKAWGEAPRLADDIRYG
RVTAAIVLNVSAPTSGFGELVEEPIEVEWLVESARPRLSRTPNGVRVYHEVASIELNAPVAGRYRDYTYGYVFEAPGTLR
AEDLRLGLALLIVYLRLDERYSIPLGLLRYRVVSAGPIKLVHLWEREAAGLLDKLDWLEVAENVERYELPGIALPLIAAV
DPVSALRIMRGEVSLESAKRLAAQVARVIAGSEVLRAGEVVVEYPRPSRSHGITSIAAVYETIDSSAGSAVVAAVASFDG
EEPRIDVIKGRVSLDSASEIAHRVLAHIDRALSQGMTIYYYGREQRDLLIECLREATWV

Sequences:

>Translated_939_residues
MARHGRIASLLRSLGYEVLVWEEPPEEPEQSDKTFSDIVPRLSGHEKARLKLYRHQLEAIEALEQGRNVILTARTGSGKT
EAWALAALRHGWRVLAVYPTLALAADQIRRLEEYYRAAGYRDAVVRIDRPSIEKRGRRGDELLRQLSKAMVVVTNPAFLL
AEMKRLAMHPNRALLEDFLTSVDLMVFDELDFYGPRGAHLLLAIVELVSKHLASKSPRVVVLSATLGNPGELAKLLTDIT
GRDTSIIEGKPFKTRNRTIIVLGKGFEALRDYVRAYASVIASRAPWILDIVGDDEEFREHMYEIYEALEAIGLRPPRPGM
DPVEILQAVLDASEPGRVTLVFTRSIRMAERLYRSLLERLPPGKRGLVGIHHHLVSKEKREQLEAAAREGRVALIITVRT
LAQGIDIGTVYRVVHVGLPADLREYMQREGRKGRRKELGVTESIVIPSGLWDRKLLETGSSALREWLGLPLEKLYINPSN
AYATIFKAMWRLLRGLELSSDEEKLLRKFGFVEEYTTALGERRLTLSKRGKAFWNDIGFYEHGPPYGYRKVLVRGDREIV
LRGEEASLRDVVEKYQPGAFDPMTEALVVRVEPREYRVYEEPVEDAVAGHEWLARAAARYEDIKKAWGEAPRLADDIRYG
RVTAAIVLNVSAPTSGFGELVEEPIEVEWLVESARPRLSRTPNGVRVYHEVASIELNAPVAGRYRDYTYGYVFEAPGTLR
AEDLRLGLALLIVYLRLDERYSIPLGLLRYRVVSAGPIKLVHLWEREAAGLLDKLDWLEVAENVERYELPGIALPLIAAV
DPVSALRIMRGEVSLESAKRLAAQVARVIAGSEVLRAGEVVVEYPRPSRSHGITSIAAVYETIDSSAGSAVVAAVASFDG
EEPRIDVIKGRVSLDSASEIAHRVLAHIDRALSQGMTIYYYGREQRDLLIECLREATWV
>Mature_938_residues
ARHGRIASLLRSLGYEVLVWEEPPEEPEQSDKTFSDIVPRLSGHEKARLKLYRHQLEAIEALEQGRNVILTARTGSGKTE
AWALAALRHGWRVLAVYPTLALAADQIRRLEEYYRAAGYRDAVVRIDRPSIEKRGRRGDELLRQLSKAMVVVTNPAFLLA
EMKRLAMHPNRALLEDFLTSVDLMVFDELDFYGPRGAHLLLAIVELVSKHLASKSPRVVVLSATLGNPGELAKLLTDITG
RDTSIIEGKPFKTRNRTIIVLGKGFEALRDYVRAYASVIASRAPWILDIVGDDEEFREHMYEIYEALEAIGLRPPRPGMD
PVEILQAVLDASEPGRVTLVFTRSIRMAERLYRSLLERLPPGKRGLVGIHHHLVSKEKREQLEAAAREGRVALIITVRTL
AQGIDIGTVYRVVHVGLPADLREYMQREGRKGRRKELGVTESIVIPSGLWDRKLLETGSSALREWLGLPLEKLYINPSNA
YATIFKAMWRLLRGLELSSDEEKLLRKFGFVEEYTTALGERRLTLSKRGKAFWNDIGFYEHGPPYGYRKVLVRGDREIVL
RGEEASLRDVVEKYQPGAFDPMTEALVVRVEPREYRVYEEPVEDAVAGHEWLARAAARYEDIKKAWGEAPRLADDIRYGR
VTAAIVLNVSAPTSGFGELVEEPIEVEWLVESARPRLSRTPNGVRVYHEVASIELNAPVAGRYRDYTYGYVFEAPGTLRA
EDLRLGLALLIVYLRLDERYSIPLGLLRYRVVSAGPIKLVHLWEREAAGLLDKLDWLEVAENVERYELPGIALPLIAAVD
PVSALRIMRGEVSLESAKRLAAQVARVIAGSEVLRAGEVVVEYPRPSRSHGITSIAAVYETIDSSAGSAVVAAVASFDGE
EPRIDVIKGRVSLDSASEIAHRVLAHIDRALSQGMTIYYYGREQRDLLIECLREATWV

Specific function: Unknown

COG id: COG1205

COG function: function code R; Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.6.1.- [C]

Molecular weight: Translated: 105543; Mature: 105412

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARHGRIASLLRSLGYEVLVWEEPPEEPEQSDKTFSDIVPRLSGHEKARLKLYRHQLEAI
CCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
EALEQGRNVILTARTGSGKTEAWALAALRHGWRVLAVYPTLALAADQIRRLEEYYRAAGY
HHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCC
RDAVVRIDRPSIEKRGRRGDELLRQLSKAMVVVTNPAFLLAEMKRLAMHPNRALLEDFLT
CCEEEEECCCCHHHCCCCHHHHHHHHHHCEEEEECCHHHHHHHHHHHCCCCHHHHHHHHH
SVDLMVFDELDFYGPRGAHLLLAIVELVSKHLASKSPRVVVLSATLGNPGELAKLLTDIT
HHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHC
GRDTSIIEGKPFKTRNRTIIVLGKGFEALRDYVRAYASVIASRAPWILDIVGDDEEFREH
CCCCCEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
MYEIYEALEAIGLRPPRPGMDPVEILQAVLDASEPGRVTLVFTRSIRMAERLYRSLLERL
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHC
PPGKRGLVGIHHHLVSKEKREQLEAAAREGRVALIITVRTLAQGIDIGTVYRVVHVGLPA
CCCCCCCHHHHHHHHCHHHHHHHHHHHHCCCEEEEEEHHHHHCCCCHHHHHHHHHCCCCH
DLREYMQREGRKGRRKELGVTESIVIPSGLWDRKLLETGSSALREWLGLPLEKLYINPSN
HHHHHHHHCCCCCCHHHCCCCCEEECCCCCCHHHHHHCCHHHHHHHHCCCHHHEEECCCH
AYATIFKAMWRLLRGLELSSDEEKLLRKFGFVEEYTTALGERRLTLSKRGKAFWNDIGFY
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCHHHHCCCHHHHHCCCC
EHGPPYGYRKVLVRGDREIVLRGEEASLRDVVEKYQPGAFDPMTEALVVRVEPREYRVYE
CCCCCCCHHHEEEECCCEEEEECCCCHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHH
EPVEDAVAGHEWLARAAARYEDIKKAWGEAPRLADDIRYGRVTAAIVLNVSAPTSGFGEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCEEEEEEEEEECCCCCCHHHH
VEEPIEVEWLVESARPRLSRTPNGVRVYHEVASIELNAPVAGRYRDYTYGYVFEAPGTLR
HCCCCCHHHHHHHCCCCCCCCCCCCEEEEEHHEEEECCCCCCCCCCCEEEEEECCCCCCC
AEDLRLGLALLIVYLRLDERYSIPLGLLRYRVVSAGPIKLVHLWEREAAGLLDKLDWLEV
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHH
AENVERYELPGIALPLIAAVDPVSALRIMRGEVSLESAKRLAAQVARVIAGSEVLRAGEV
HHCHHHHCCCCHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCE
VVEYPRPSRSHGITSIAAVYETIDSSAGSAVVAAVASFDGEEPRIDVIKGRVSLDSASEI
EEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH
AHRVLAHIDRALSQGMTIYYYGREQRDLLIECLREATWV
HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ARHGRIASLLRSLGYEVLVWEEPPEEPEQSDKTFSDIVPRLSGHEKARLKLYRHQLEAI
CCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
EALEQGRNVILTARTGSGKTEAWALAALRHGWRVLAVYPTLALAADQIRRLEEYYRAAGY
HHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCC
RDAVVRIDRPSIEKRGRRGDELLRQLSKAMVVVTNPAFLLAEMKRLAMHPNRALLEDFLT
CCEEEEECCCCHHHCCCCHHHHHHHHHHCEEEEECCHHHHHHHHHHHCCCCHHHHHHHHH
SVDLMVFDELDFYGPRGAHLLLAIVELVSKHLASKSPRVVVLSATLGNPGELAKLLTDIT
HHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHC
GRDTSIIEGKPFKTRNRTIIVLGKGFEALRDYVRAYASVIASRAPWILDIVGDDEEFREH
CCCCCEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
MYEIYEALEAIGLRPPRPGMDPVEILQAVLDASEPGRVTLVFTRSIRMAERLYRSLLERL
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHC
PPGKRGLVGIHHHLVSKEKREQLEAAAREGRVALIITVRTLAQGIDIGTVYRVVHVGLPA
CCCCCCCHHHHHHHHCHHHHHHHHHHHHCCCEEEEEEHHHHHCCCCHHHHHHHHHCCCCH
DLREYMQREGRKGRRKELGVTESIVIPSGLWDRKLLETGSSALREWLGLPLEKLYINPSN
HHHHHHHHCCCCCCHHHCCCCCEEECCCCCCHHHHHHCCHHHHHHHHCCCHHHEEECCCH
AYATIFKAMWRLLRGLELSSDEEKLLRKFGFVEEYTTALGERRLTLSKRGKAFWNDIGFY
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCHHHHCCCHHHHHCCCC
EHGPPYGYRKVLVRGDREIVLRGEEASLRDVVEKYQPGAFDPMTEALVVRVEPREYRVYE
CCCCCCCHHHEEEECCCEEEEECCCCHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHH
EPVEDAVAGHEWLARAAARYEDIKKAWGEAPRLADDIRYGRVTAAIVLNVSAPTSGFGEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCEEEEEEEEEECCCCCCHHHH
VEEPIEVEWLVESARPRLSRTPNGVRVYHEVASIELNAPVAGRYRDYTYGYVFEAPGTLR
HCCCCCHHHHHHHCCCCCCCCCCCCEEEEEHHEEEECCCCCCCCCCCEEEEEECCCCCCC
AEDLRLGLALLIVYLRLDERYSIPLGLLRYRVVSAGPIKLVHLWEREAAGLLDKLDWLEV
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHH
AENVERYELPGIALPLIAAVDPVSALRIMRGEVSLESAKRLAAQVARVIAGSEVLRAGEV
HHCHHHHCCCCHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCE
VVEYPRPSRSHGITSIAAVYETIDSSAGSAVVAAVASFDGEEPRIDVIKGRVSLDSASEI
EEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH
AHRVLAHIDRALSQGMTIYYYGREQRDLLIECLREATWV
HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on acid anhydrides [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA