Click here to switch to the map view.

The map label for this gene is ytcJ [H]

Identifier: 124027933

GI number: 124027933

Start: 1082460

End: 1084004

Strand: Direct

Name: ytcJ [H]

Synonym: Hbut_1065

Alternate gene names: 124027933

Gene position: 1082460-1084004 (Clockwise)

Preceding gene: 124027931

Following gene: 124027934

Centisome position: 64.93

GC content: 58.96

Gene sequence:

>1545_bases
TTGTCTTGCCCTGTACTTGTTACTGCTAGGAGGATCTATGTAGGGTTTAAGCCTACGAGGCTTGTGGAGGCTATTGTCGC
GGTTAACGGGCTCGTAGTCTACGCGGGGTCTAGGAACGATGCCGAACGGATTGCGCGTGGGCTCGCTGTGGCTGTTGGAT
GTAGCCGTCCACGGGTGCTAGAGTTCACTGACTCGTACGCGCTGCCGGGCTTCGTTGATGCTCATTTGCACTTGCGAGGC
GTGGGGGCTAAGCTCTATGGTATCGACCTCTCCGATGTGAGGAGCATTGAGGAGTTCAAGGCTGTTGTTGCAAGGGAGGT
TGCGCGGTTTGAGTCATGGATTATTGGACGTGGCTGGGACCAGGAGAGAATGGGGGCATGGCCCACCCGCTATGACCTGG
ACGAGGTTGTACCAGATAAACCCGTCGTGCTGATGAGGATTTGTGGCCACGCAGCCGTGCTCAACACTGTTGCCCTCAAG
GAGCTTGGGTTCCTCGGGCGGAGGAGCCCGGACATCGACGTTGGCTGCGACGGTGAGCCTACAGGCCTAGTCTTCGAGAA
GGCTGCTGAGGAGGCCTATAGGGAGGCTGTACGTAAGCTCGACCAGGTTAAGCTGATACTTGAGGCTGCGAGGCACGTGT
TGTCCTACGGGGTTACCCTTGTCGGTGATATGGGTGTTGACAGCGAGGAGATTTACGGGCTTGTGAGGGCTAGGTTTATG
GGCTTGCTGCCGCTGCGTGTCCGCATCTATCTCTCCCAGAGCCTCTTCGAGCAACTGGAGCGGGCTGGTGTTATCCCAAT
TTTTGGCGATACGTTTCTCGCTGTGAAGGGCGTCAAGATGTTTATGGATGGGAGCCTAGGCGCTAGGACTGCTTGGCTAA
GGGAGCCCTATAGCGATGCATCGGAGACCAGGGGTAGGAGCCTAGCAGGCTGGAGGGACGTCGCGAGGCTCGCGGAGGCT
GCGAAGCGGTGGGGCGCCGATGTAGCAGTCCACGCTATAGGTGATGCGGCTCTCGCGGAGGCTCTCCATGGCATGGAGGC
TGCCAGGTGTCGCTGTAGGATAGAGCATGCGAGTCTCGCGCCTCCAGACCTGCTGAGTGTTGCTGCAAGGCTGGGGGTTA
GGATTGCTGTTCAGCCACGGTTCCTAGTTAGTGACACATGGGCGGCAGACCGGCTTGGTGTTGAGAGGGTTCGATGGCTC
TACCCGTTCAAGACAATGATATCCATGGGTATACAAGTGGGCTTCTCTAGCGACGCGCCTGTAGAGCCCGTGAACCCGTT
CGAAGGCATCTACGCCGCGGCTACCCGCGGCGCGGTAGCAGGCTATACCCGGGATGAGGCGTTGGATGTGGAGACTGGAC
TCCACCTCTACACAGCTGGCTCCGCCGCGATACTTGGCGACCGGAGGGCGGGTTGCCTCGAGCCGGGCTGCTACGCGGAC
ATAGCCGTGGTCGACCATGACCCGTTGGAGGTTAGTGTCGAGGAGCTACCGGGGATAAGGTTCGAAGCGAGTATTGTTGG
CGGGGAGCTTGTGTGGAGCCGGTAA

Upstream 100 bases:

>100_bases
CGCCACCCGCCGGTGAAGGCTCTAGCCGAAGGGGGCGTATCTAGGCTACTCCTATCAAGGGCTCCCCGGGCCTTCCTAGG
GTTTGGCGGGTGTCTGGGTG

Downstream 100 bases:

>100_bases
CGGCGTGCCACCAGCAGGCATATGCTTGCGCCGAAGCCGTTGTCATTGATGCTGCTGTGACACGACCAGGGCTCACTAGC
TTCTCTAGGCCGCGGAGCGA

Product: metal-dependent hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 514; Mature: 513

Protein sequence:

>514_residues
MSCPVLVTARRIYVGFKPTRLVEAIVAVNGLVVYAGSRNDAERIARGLAVAVGCSRPRVLEFTDSYALPGFVDAHLHLRG
VGAKLYGIDLSDVRSIEEFKAVVAREVARFESWIIGRGWDQERMGAWPTRYDLDEVVPDKPVVLMRICGHAAVLNTVALK
ELGFLGRRSPDIDVGCDGEPTGLVFEKAAEEAYREAVRKLDQVKLILEAARHVLSYGVTLVGDMGVDSEEIYGLVRARFM
GLLPLRVRIYLSQSLFEQLERAGVIPIFGDTFLAVKGVKMFMDGSLGARTAWLREPYSDASETRGRSLAGWRDVARLAEA
AKRWGADVAVHAIGDAALAEALHGMEAARCRCRIEHASLAPPDLLSVAARLGVRIAVQPRFLVSDTWAADRLGVERVRWL
YPFKTMISMGIQVGFSSDAPVEPVNPFEGIYAAATRGAVAGYTRDEALDVETGLHLYTAGSAAILGDRRAGCLEPGCYAD
IAVVDHDPLEVSVEELPGIRFEASIVGGELVWSR

Sequences:

>Translated_514_residues
MSCPVLVTARRIYVGFKPTRLVEAIVAVNGLVVYAGSRNDAERIARGLAVAVGCSRPRVLEFTDSYALPGFVDAHLHLRG
VGAKLYGIDLSDVRSIEEFKAVVAREVARFESWIIGRGWDQERMGAWPTRYDLDEVVPDKPVVLMRICGHAAVLNTVALK
ELGFLGRRSPDIDVGCDGEPTGLVFEKAAEEAYREAVRKLDQVKLILEAARHVLSYGVTLVGDMGVDSEEIYGLVRARFM
GLLPLRVRIYLSQSLFEQLERAGVIPIFGDTFLAVKGVKMFMDGSLGARTAWLREPYSDASETRGRSLAGWRDVARLAEA
AKRWGADVAVHAIGDAALAEALHGMEAARCRCRIEHASLAPPDLLSVAARLGVRIAVQPRFLVSDTWAADRLGVERVRWL
YPFKTMISMGIQVGFSSDAPVEPVNPFEGIYAAATRGAVAGYTRDEALDVETGLHLYTAGSAAILGDRRAGCLEPGCYAD
IAVVDHDPLEVSVEELPGIRFEASIVGGELVWSR
>Mature_513_residues
SCPVLVTARRIYVGFKPTRLVEAIVAVNGLVVYAGSRNDAERIARGLAVAVGCSRPRVLEFTDSYALPGFVDAHLHLRGV
GAKLYGIDLSDVRSIEEFKAVVAREVARFESWIIGRGWDQERMGAWPTRYDLDEVVPDKPVVLMRICGHAAVLNTVALKE
LGFLGRRSPDIDVGCDGEPTGLVFEKAAEEAYREAVRKLDQVKLILEAARHVLSYGVTLVGDMGVDSEEIYGLVRARFMG
LLPLRVRIYLSQSLFEQLERAGVIPIFGDTFLAVKGVKMFMDGSLGARTAWLREPYSDASETRGRSLAGWRDVARLAEAA
KRWGADVAVHAIGDAALAEALHGMEAARCRCRIEHASLAPPDLLSVAARLGVRIAVQPRFLVSDTWAADRLGVERVRWLY
PFKTMISMGIQVGFSSDAPVEPVNPFEGIYAAATRGAVAGYTRDEALDVETGLHLYTAGSAAILGDRRAGCLEPGCYADI
AVVDHDPLEVSVEELPGIRFEASIVGGELVWSR

Specific function: Unknown

COG id: COG1574

COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3 [H]

EC number: NA

Molecular weight: Translated: 56036; Mature: 55905

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCPVLVTARRIYVGFKPTRLVEAIVAVNGLVVYAGSRNDAERIARGLAVAVGCSRPRVL
CCCCEEEEEEEEEECCCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHEEEECCCCCCEE
EFTDSYALPGFVDAHLHLRGVGAKLYGIDLSDVRSIEEFKAVVAREVARFESWIIGRGWD
EECCCCCCCCEEECEEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
QERMGAWPTRYDLDEVVPDKPVVLMRICGHAAVLNTVALKELGFLGRRSPDIDVGCDGEP
HHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
TGLVFEKAAEEAYREAVRKLDQVKLILEAARHVLSYGVTLVGDMGVDSEEIYGLVRARFM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHH
GLLPLRVRIYLSQSLFEQLERAGVIPIFGDTFLAVKGVKMFMDGSLGARTAWLREPYSDA
CCCHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHEECCCCCCCHHHHHCCCCCH
SETRGRSLAGWRDVARLAEAAKRWGADVAVHAIGDAALAEALHGMEAARCRCRIEHASLA
HHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCHHHHHHHEEECCCCCC
PPDLLSVAARLGVRIAVQPRFLVSDTWAADRLGVERVRWLYPFKTMISMGIQVGFSSDAP
CHHHHHHHHHCCEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC
VEPVNPFEGIYAAATRGAVAGYTRDEALDVETGLHLYTAGSAAILGDRRAGCLEPGCYAD
CCCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCEEEEECCCEEEECCCCCCCCCCCCCEE
IAVVDHDPLEVSVEELPGIRFEASIVGGELVWSR
EEEEECCCCEEEHHHCCCCEEEEEEECCEEEECC
>Mature Secondary Structure 
SCPVLVTARRIYVGFKPTRLVEAIVAVNGLVVYAGSRNDAERIARGLAVAVGCSRPRVL
CCCEEEEEEEEEECCCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHEEEECCCCCCEE
EFTDSYALPGFVDAHLHLRGVGAKLYGIDLSDVRSIEEFKAVVAREVARFESWIIGRGWD
EECCCCCCCCEEECEEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
QERMGAWPTRYDLDEVVPDKPVVLMRICGHAAVLNTVALKELGFLGRRSPDIDVGCDGEP
HHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
TGLVFEKAAEEAYREAVRKLDQVKLILEAARHVLSYGVTLVGDMGVDSEEIYGLVRARFM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHH
GLLPLRVRIYLSQSLFEQLERAGVIPIFGDTFLAVKGVKMFMDGSLGARTAWLREPYSDA
CCCHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHEECCCCCCCHHHHHCCCCCH
SETRGRSLAGWRDVARLAEAAKRWGADVAVHAIGDAALAEALHGMEAARCRCRIEHASLA
HHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCHHHHHHHEEECCCCCC
PPDLLSVAARLGVRIAVQPRFLVSDTWAADRLGVERVRWLYPFKTMISMGIQVGFSSDAP
CHHHHHHHHHCCEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC
VEPVNPFEGIYAAATRGAVAGYTRDEALDVETGLHLYTAGSAAILGDRRAGCLEPGCYAD
CCCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCEEEEECCCEEEECCCCCCCCCCCCCEE
IAVVDHDPLEVSVEELPGIRFEASIVGGELVWSR
EEEEECCCCEEEHHHCCCCEEEEEEECCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]