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The map label for this gene is pdxS

Identifier: 124027901

GI number: 124027901

Start: 1045059

End: 1046066

Strand: Direct

Name: pdxS

Synonym: Hbut_1032

Alternate gene names: 124027901

Gene position: 1045059-1046066 (Clockwise)

Preceding gene: 124027897

Following gene: 124027902

Centisome position: 62.68

GC content: 51.39

Gene sequence:

>1008_bases
TTGAAGCTGATCGACTCGTATGCCGTGCTTGAGAAGATTCGAGACTTGATATACAGCCTTCTAGAGGCCCGTGATAGGGC
TATGGAGAATGGGTTGGAAGTTATACCTGTTCGCACTGCTACACCACTAGTACGCTATGGCTTTATCTCCATGCTTAAAG
GGGGCGTAGTAATGGATGTAACCAATGAACAGCAAGCCGAGATAGCCGAAGATGCTGGTGCGGTTGGAGTCATGGTTCTA
GACAAGCTTCCATATGATGTGAGGAAGGCGGGAGGCGTGGCTAGGACGGCTGACCTCAACGTTATACGAGCCGTTATGGA
GACTATTACGATACCTGTTTCCGCCAAGTGTAGGATAGGCCACTACTGGGAGGCAAAGCTGCTTGAGGAGATAGGTGTCG
ACCTTATAGATGAGAGTGAAGTCCTCACACCTACTGATGAGAAGGCCCATATATGGAAGTGGGAATTCCGTGTCCCATTT
GTCAACGGTGCAAGGTCTCTTCCGGAGGCTCTGAGAAGGATATGGGAAGGTGCCTCCATGATAAGGACTAAGGGTGAAGC
TGGAACCGGTAATGTGGCCGAGGCAGTTAGGCACATGAAAGCTGTAAATCGCGACATAGCAGTGCTTAGAGGCTACTATA
AAGCTGGGGATATCGAAGCCATAAGGCTCTACGCGAAGAGTAATAACGTTCCATTTGAGCTAGCCTTGCTAACAGCTAGG
CTTGGCAGGCTTCCAGTGGTAAACTTTGCTGCCGGAGGGATAGCCACCCCTGCCGATGCTGCTCTAATGATGTGGCTTGG
TGCAGACGGCGTCTTCGTGGGCTCAGGGATATTCAAGAGCCGTGATCCTGAACAGAGGGCACAAGCGATAGTCCTAGCGA
CGACATACTGGGACGACCCCGAGACTGTTGCGGAAGCCCAGTCGATGGTTTCAGAGAGGAACGCGATGCCGGGTATAGAC
ATTACTAGGCTCAAGCCCGAAGAGCTGTTGCAGATTAGAGGTGAGTAG

Upstream 100 bases:

>100_bases
GATGATGCTGTGTCTGTTGAACGTTCAGCTAGGCTCTAAGCCCTTCAGCGACATCTAGCCCCTTATCTGGGCTGAAAACC
TTCCGGGGTGTGTGCAGGTT

Downstream 100 bases:

>100_bases
CCATGGTTGTAGTAGGTGTTCTCGCGCTGCAGGGGGACTGGATTGAGCATATAGAGCTTCTAAGAGAAATTGAAGGCGTT
GAAGCCGTACCTGTTAAGAC

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MKLIDSYAVLEKIRDLIYSLLEARDRAMENGLEVIPVRTATPLVRYGFISMLKGGVVMDVTNEQQAEIAEDAGAVGVMVL
DKLPYDVRKAGGVARTADLNVIRAVMETITIPVSAKCRIGHYWEAKLLEEIGVDLIDESEVLTPTDEKAHIWKWEFRVPF
VNGARSLPEALRRIWEGASMIRTKGEAGTGNVAEAVRHMKAVNRDIAVLRGYYKAGDIEAIRLYAKSNNVPFELALLTAR
LGRLPVVNFAAGGIATPADAALMMWLGADGVFVGSGIFKSRDPEQRAQAIVLATTYWDDPETVAEAQSMVSERNAMPGID
ITRLKPEELLQIRGE

Sequences:

>Translated_335_residues
MKLIDSYAVLEKIRDLIYSLLEARDRAMENGLEVIPVRTATPLVRYGFISMLKGGVVMDVTNEQQAEIAEDAGAVGVMVL
DKLPYDVRKAGGVARTADLNVIRAVMETITIPVSAKCRIGHYWEAKLLEEIGVDLIDESEVLTPTDEKAHIWKWEFRVPF
VNGARSLPEALRRIWEGASMIRTKGEAGTGNVAEAVRHMKAVNRDIAVLRGYYKAGDIEAIRLYAKSNNVPFELALLTAR
LGRLPVVNFAAGGIATPADAALMMWLGADGVFVGSGIFKSRDPEQRAQAIVLATTYWDDPETVAEAQSMVSERNAMPGID
ITRLKPEELLQIRGE
>Mature_335_residues
MKLIDSYAVLEKIRDLIYSLLEARDRAMENGLEVIPVRTATPLVRYGFISMLKGGVVMDVTNEQQAEIAEDAGAVGVMVL
DKLPYDVRKAGGVARTADLNVIRAVMETITIPVSAKCRIGHYWEAKLLEEIGVDLIDESEVLTPTDEKAHIWKWEFRVPF
VNGARSLPEALRRIWEGASMIRTKGEAGTGNVAEAVRHMKAVNRDIAVLRGYYKAGDIEAIRLYAKSNNVPFELALLTAR
LGRLPVVNFAAGGIATPADAALMMWLGADGVFVGSGIFKSRDPEQRAQAIVLATTYWDDPETVAEAQSMVSERNAMPGID
ITRLKPEELLQIRGE

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family

Homologues:

Organism=Saccharomyces cerevisiae, GI6321049, Length=281, Percent_Identity=54.4483985765125, Blast_Score=288, Evalue=7e-79,
Organism=Saccharomyces cerevisiae, GI6323996, Length=281, Percent_Identity=54.4483985765125, Blast_Score=288, Evalue=1e-78,
Organism=Saccharomyces cerevisiae, GI6323743, Length=281, Percent_Identity=51.9572953736655, Blast_Score=284, Evalue=2e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PDXS_HYPBU (A2BLL5)

Other databases:

- EMBL:   CP000493
- RefSeq:   YP_001013221.1
- ProteinModelPortal:   A2BLL5
- SMR:   A2BLL5
- STRING:   A2BLL5
- GeneID:   4781874
- GenomeReviews:   CP000493_GR
- KEGG:   hbu:Hbut_1032
- eggNOG:   arNOG04544
- HOGENOM:   HBG292342
- OMA:   ARMSDPD
- PhylomeDB:   A2BLL5
- ProtClustDB:   PRK04180
- BioCyc:   HBUT415426:HBUT_1032-MONOMER
- HAMAP:   MF_01824
- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852
- Gene3D:   G3DSA:3.20.20.70
- PIRSF:   PIRSF029271

Pfam domain/function: PF01680 SOR_SNZ; SSF51366 RibP_bind_barrel

EC number: NA

Molecular weight: Translated: 36866; Mature: 36866

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS01235 PDXS_SNZ_1; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLIDSYAVLEKIRDLIYSLLEARDRAMENGLEVIPVRTATPLVRYGFISMLKGGVVMDV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCEEEEE
TNEQQAEIAEDAGAVGVMVLDKLPYDVRKAGGVARTADLNVIRAVMETITIPVSAKCRIG
CCCHHHHHHHHCCCEEEEEEHHCCHHHHHCCCCEEHHHHHHHHHHHHHHCCCCCCCEEEC
HYWEAKLLEEIGVDLIDESEVLTPTDEKAHIWKWEFRVPFVNGARSLPEALRRIWEGASM
CHHHHHHHHHCCCCEECCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCHH
IRTKGEAGTGNVAEAVRHMKAVNRDIAVLRGYYKAGDIEAIRLYAKSNNVPFELALLTAR
HHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEEECCCCCEEHHHHHHH
LGRLPVVNFAAGGIATPADAALMMWLGADGVFVGSGIFKSRDPEQRAQAIVLATTYWDDP
HCCCCEEEECCCCCCCCCHHHEEEEECCCCEEECCCCCCCCCHHHHCCEEEEEEEECCCH
ETVAEAQSMVSERNAMPGIDITRLKPEELLQIRGE
HHHHHHHHHHHHHCCCCCCCEECCCHHHHHHCCCC
>Mature Secondary Structure
MKLIDSYAVLEKIRDLIYSLLEARDRAMENGLEVIPVRTATPLVRYGFISMLKGGVVMDV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCEEEEE
TNEQQAEIAEDAGAVGVMVLDKLPYDVRKAGGVARTADLNVIRAVMETITIPVSAKCRIG
CCCHHHHHHHHCCCEEEEEEHHCCHHHHHCCCCEEHHHHHHHHHHHHHHCCCCCCCEEEC
HYWEAKLLEEIGVDLIDESEVLTPTDEKAHIWKWEFRVPFVNGARSLPEALRRIWEGASM
CHHHHHHHHHCCCCEECCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCHH
IRTKGEAGTGNVAEAVRHMKAVNRDIAVLRGYYKAGDIEAIRLYAKSNNVPFELALLTAR
HHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEEECCCCCEEHHHHHHH
LGRLPVVNFAAGGIATPADAALMMWLGADGVFVGSGIFKSRDPEQRAQAIVLATTYWDDP
HCCCCEEEECCCCCCCCCHHHEEEEECCCCEEECCCCCCCCCHHHHCCEEEEEEEECCCH
ETVAEAQSMVSERNAMPGIDITRLKPEELLQIRGE
HHHHHHHHHHHHHCCCCCCCEECCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA