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The map label for this gene is atpD [H]

Identifier: 124027660

GI number: 124027660

Start: 775328

End: 775990

Strand: Reverse

Name: atpD [H]

Synonym: Hbut_0782

Alternate gene names: 124027660

Gene position: 775990-775328 (Counterclockwise)

Preceding gene: 124027661

Following gene: 124027658

Centisome position: 46.55

GC content: 54.6

Gene sequence:

>663_bases
TTGTCACTACAGTTCGGTGGCTCTCGAGTACTGCCAACAAAGATTAACCTTATCAGGCTCCGCCGCGAGCTAGCAACGCT
CCGTAGAATAAGGAAGGTTATTGAGGAGAAGCGTGACGTACTACTCCTCTACATAAGGCAGGTTGGCGCCGATTATCAGA
GAGCTTACCAGGAGGCAGCCCGCCGGCTAGCGGAAGCCTACGGAGAGTTCTTTATGGCTCTAGCAGCTGTTGGTGGGCTC
GAGCAGGCAAAGCCAATTATTGAGAGGCTACCTGAGAGCCTAAGACTATCAGTGTACGAGCGTGTGCTATTCGCGGTTAA
GACGCCAGGCTTCCGGCTGCGCAAGGAGACGGTGCCAGAGGCTGCTATCTCCGCTGTAAGGTTGCCAGCAAGGGTGTATG
AAGCTAGGAGGAAAATGCTCGAGGCGCTCGAAGACCTTATACGAGTTGTGGAGTCCGAGGCTGCGCTAAGGAAGCTGCTG
AGGGAGCTAAAGGAGACCCAGAGGCTGCTCAACGCCCTAGACTATAGCATCATACCTAGCTACGAGTCCAGTATAAAGTA
CATCAAGCTAGTATTGGACGACCGTATGAGAGAAGAGGTTGTAAGGCTGAAGACGCTCAAGCGTCGCCTAGCCCGTCGCC
GCGGCGGAGAAGGCCTCGCCTAG

Upstream 100 bases:

>100_bases
GCCAGAATCAGAGCTATACAAGATCAAGGACGAGTACATCAGGAAATACCACCCCAAGTACCGCAAGAAGCAGAGCCAGA
GCAGCGGAGGGAAGTAGCGC

Downstream 100 bases:

>100_bases
TTTGTCCCTCTACTTTTCCAGCTGGAGCCCGTACTTTTCAGCGAAGCTCCTCGCGAGTTGTTTAACCCGCGATGGAACCT
TTGCCAGAACCACGGTGTCC

Product: V-type ATP synthase subunit D

Products: ADP; phosphate; H+

Alternate protein names: V-ATPase subunit D [H]

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MSLQFGGSRVLPTKINLIRLRRELATLRRIRKVIEEKRDVLLLYIRQVGADYQRAYQEAARRLAEAYGEFFMALAAVGGL
EQAKPIIERLPESLRLSVYERVLFAVKTPGFRLRKETVPEAAISAVRLPARVYEARRKMLEALEDLIRVVESEAALRKLL
RELKETQRLLNALDYSIIPSYESSIKYIKLVLDDRMREEVVRLKTLKRRLARRRGGEGLA

Sequences:

>Translated_220_residues
MSLQFGGSRVLPTKINLIRLRRELATLRRIRKVIEEKRDVLLLYIRQVGADYQRAYQEAARRLAEAYGEFFMALAAVGGL
EQAKPIIERLPESLRLSVYERVLFAVKTPGFRLRKETVPEAAISAVRLPARVYEARRKMLEALEDLIRVVESEAALRKLL
RELKETQRLLNALDYSIIPSYESSIKYIKLVLDDRMREEVVRLKTLKRRLARRRGGEGLA
>Mature_219_residues
SLQFGGSRVLPTKINLIRLRRELATLRRIRKVIEEKRDVLLLYIRQVGADYQRAYQEAARRLAEAYGEFFMALAAVGGLE
QAKPIIERLPESLRLSVYERVLFAVKTPGFRLRKETVPEAAISAVRLPARVYEARRKMLEALEDLIRVVESEAALRKLLR
ELKETQRLLNALDYSIIPSYESSIKYIKLVLDDRMREEVVRLKTLKRRLARRRGGEGLA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane [H]

COG id: COG1394

COG function: function code C; Archaeal/vacuolar-type H+-ATPase subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the V-ATPase D subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002699 [H]

Pfam domain/function: PF01813 ATP-synt_D [H]

EC number: 3.6.3.14

Molecular weight: Translated: 25493; Mature: 25361

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLQFGGSRVLPTKINLIRLRRELATLRRIRKVIEEKRDVLLLYIRQVGADYQRAYQEAA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
RRLAEAYGEFFMALAAVGGLEQAKPIIERLPESLRLSVYERVLFAVKTPGFRLRKETVPE
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
AAISAVRLPARVYEARRKMLEALEDLIRVVESEAALRKLLRELKETQRLLNALDYSIIPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
YESSIKYIKLVLDDRMREEVVRLKTLKRRLARRRGGEGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SLQFGGSRVLPTKINLIRLRRELATLRRIRKVIEEKRDVLLLYIRQVGADYQRAYQEAA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
RRLAEAYGEFFMALAAVGGLEQAKPIIERLPESLRLSVYERVLFAVKTPGFRLRKETVPE
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
AAISAVRLPARVYEARRKMLEALEDLIRVVESEAALRKLLRELKETQRLLNALDYSIIPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
YESSIKYIKLVLDDRMREEVVRLKTLKRRLARRRGGEGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]