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The map label for this gene is rpl40e [H]

Identifier: 124027464

GI number: 124027464

Start: 548215

End: 548388

Strand: Reverse

Name: rpl40e [H]

Synonym: Hbut_0579

Alternate gene names: 124027464

Gene position: 548388-548215 (Counterclockwise)

Preceding gene: 124027465

Following gene: 124027452

Centisome position: 32.89

GC content: 49.43

Gene sequence:

>174_bases
ATGGTTGCAGCGCGCGACCCAGAAACAATGAGAATTGTGTACCAACGTGTACTAAACAAGCTTGTCTGTAGAAAGTGTGG
AGCGCTAAACCCGCCAGGTGCAAAGAAGTGTAGGCGCTGTAAGAGCAAGAATCTGAGGCCGAAACGCGCGATGATAGGTA
TGAAGAAGGGCTAA

Upstream 100 bases:

>100_bases
AGCCACAGCTGCAGCTATAGGCTCGAGGGTTGTTCCAGAAAGAAGCCACGGAGAGCACCTTATAAGAGGCCCCGTGGAGA
GGGGAGCCGGGGGGTAAGCC

Downstream 100 bases:

>100_bases
CCTCCCTCCACCTTCTCCGGCCTACTCCTCTCCAGGATCCTCTTAGCACCCTCAACAACATAGAGCGTTATTTCTCTAAG
CTTCCGAACATCCCTTACAC

Product: 50S ribosomal protein L40e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 57; Mature: 57

Protein sequence:

>57_residues
MVAARDPETMRIVYQRVLNKLVCRKCGALNPPGAKKCRRCKSKNLRPKRAMIGMKKG

Sequences:

>Translated_57_residues
MVAARDPETMRIVYQRVLNKLVCRKCGALNPPGAKKCRRCKSKNLRPKRAMIGMKKG
>Mature_57_residues
MVAARDPETMRIVYQRVLNKLVCRKCGALNPPGAKKCRRCKSKNLRPKRAMIGMKKG

Specific function: Unknown

COG id: COG1552

COG function: function code J; Ribosomal protein L40E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L40e family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001975
- InterPro:   IPR001876 [H]

Pfam domain/function: PF01020 Ribosomal_L40e [H]

EC number: NA

Molecular weight: Translated: 6472; Mature: 6472

Theoretical pI: Translated: 11.69; Mature: 11.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.0 %Cys     (Translated Protein)
7.0 %Met     (Translated Protein)
14.0 %Cys+Met (Translated Protein)
7.0 %Cys     (Mature Protein)
7.0 %Met     (Mature Protein)
14.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAARDPETMRIVYQRVLNKLVCRKCGALNPPGAKKCRRCKSKNLRPKRAMIGMKKG
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCC
>Mature Secondary Structure
MVAARDPETMRIVYQRVLNKLVCRKCGALNPPGAKKCRRCKSKNLRPKRAMIGMKKG
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA