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The map label for this gene is 124027459

Identifier: 124027459

GI number: 124027459

Start: 545138

End: 545788

Strand: Direct

Name: 124027459

Synonym: Hbut_0574

Alternate gene names: NA

Gene position: 545138-545788 (Clockwise)

Preceding gene: 124027458

Following gene: 124027460

Centisome position: 32.7

GC content: 53.0

Gene sequence:

>651_bases
ATGGTGCTGGAAAAGCGTGTAACCAGCTATAGGATCCTGGTGACCACCTCTCACCGTCCAACCCAGCGTATAAGGAGCTT
TGTCAAGGACTTGGCATCGGTCCTGCCAAACGCGGTTAAAATCAATCGTGGTAAGGCCACTATGCGCGATCTATACTACG
AGGCAGCCAGTATTGGTGCAAACCGCGTCGTCATAGTTGCTGGATGGAAGGGTAATCCAGGCTCTATAAACGTCTACGAG
CCTGTAGAGCCACCAGACATGGAGCTTAAGCTTATTGCTAGGCTTTTACTTAGAGGCGTTAGATTGTCGAGGGAGACTCC
TGGAGCACAACGCTCATATGGAACTTCGAGCCTTGGCGTCTATGTTGAATCAGGCTCCCAGGAGCTAGCAGTACTTGCTG
ACACACTGATACGCGCGTTTAACGCGAAGCTTATACTCGACCTTGAGAGAGCACATCGTGTCGTGGATGTTGTAGCTGTC
ATCTCGCCTGGCAGGGATGACTACGTGGCTGAGATAAGGTTCCTATGTACTGGTTCTGGGCGGCAGTGTGGCCCCCTACT
GAGGCTCGCGGGGGTAGCGGATAATGTATCGGGTTACAGGCTGCATAGAGCTAGAGCTGCCGGAGGAGAAGGCGCTGCAG
GCAGTAGCTAG

Upstream 100 bases:

>100_bases
CTAGCCCCAAGCCCGACTTCTTTCCATGTAGAAAGCTCTACCCCTACCTGGTCTTACAGTGATATCGGCAGCTGAGCGGG
GACTTCTGGACTGATGGGCT

Downstream 100 bases:

>100_bases
GGCTTTAGATGTCGAGGCTAGGAACCCGCCAGACCCGCGGAGAGGCCGTGTAGAGGTACGTGTTGAGCCTGGCAAACTAG
TAGTCTGTTTCGAGGCACGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MVLEKRVTSYRILVTTSHRPTQRIRSFVKDLASVLPNAVKINRGKATMRDLYYEAASIGANRVVIVAGWKGNPGSINVYE
PVEPPDMELKLIARLLLRGVRLSRETPGAQRSYGTSSLGVYVESGSQELAVLADTLIRAFNAKLILDLERAHRVVDVVAV
ISPGRDDYVAEIRFLCTGSGRQCGPLLRLAGVADNVSGYRLHRARAAGGEGAAGSS

Sequences:

>Translated_216_residues
MVLEKRVTSYRILVTTSHRPTQRIRSFVKDLASVLPNAVKINRGKATMRDLYYEAASIGANRVVIVAGWKGNPGSINVYE
PVEPPDMELKLIARLLLRGVRLSRETPGAQRSYGTSSLGVYVESGSQELAVLADTLIRAFNAKLILDLERAHRVVDVVAV
ISPGRDDYVAEIRFLCTGSGRQCGPLLRLAGVADNVSGYRLHRARAAGGEGAAGSS
>Mature_216_residues
MVLEKRVTSYRILVTTSHRPTQRIRSFVKDLASVLPNAVKINRGKATMRDLYYEAASIGANRVVIVAGWKGNPGSINVYE
PVEPPDMELKLIARLLLRGVRLSRETPGAQRSYGTSSLGVYVESGSQELAVLADTLIRAFNAKLILDLERAHRVVDVVAV
ISPGRDDYVAEIRFLCTGSGRQCGPLLRLAGVADNVSGYRLHRARAAGGEGAAGSS

Specific function: Probably involved in the biogenesis of the ribosome [H]

COG id: COG2136

COG function: function code JA; Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Brix domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004154
- InterPro:   IPR007109 [H]

Pfam domain/function: PF04427 Brix [H]

EC number: NA

Molecular weight: Translated: 23387; Mature: 23387

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS50833 BRIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLEKRVTSYRILVTTSHRPTQRIRSFVKDLASVLPNAVKINRGKATMRDLYYEAASIGA
CCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCC
NRVVIVAGWKGNPGSINVYEPVEPPDMELKLIARLLLRGVRLSRETPGAQRSYGTSSLGV
CEEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE
YVESGSQELAVLADTLIRAFNAKLILDLERAHRVVDVVAVISPGRDDYVAEIRFLCTGSG
EEECCCCHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHEEEECCCCCCCEEEEEEEECCCC
RQCGPLLRLAGVADNVSGYRLHRARAAGGEGAAGSS
CCCCHHHHHHCCCCCCCCEEEEHHHCCCCCCCCCCC
>Mature Secondary Structure
MVLEKRVTSYRILVTTSHRPTQRIRSFVKDLASVLPNAVKINRGKATMRDLYYEAASIGA
CCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCC
NRVVIVAGWKGNPGSINVYEPVEPPDMELKLIARLLLRGVRLSRETPGAQRSYGTSSLGV
CEEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE
YVESGSQELAVLADTLIRAFNAKLILDLERAHRVVDVVAVISPGRDDYVAEIRFLCTGSG
EEECCCCHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHEEEECCCCCCCEEEEEEEECCCC
RQCGPLLRLAGVADNVSGYRLHRARAAGGEGAAGSS
CCCCHHHHHHCCCCCCCCEEEEHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]