Click here to switch to the map view.

The map label for this gene is rps4p

Identifier: 124027413

GI number: 124027413

Start: 511691

End: 512221

Strand: Direct

Name: rps4p

Synonym: Hbut_0528

Alternate gene names: 124027413

Gene position: 511691-512221 (Clockwise)

Preceding gene: 124027412

Following gene: 124027414

Centisome position: 30.69

GC content: 54.61

Gene sequence:

>531_bases
GTGGGTGACCCGAAGAAGCCCCGTAAGAAGTGGATGGGTCCCAAGCACCCCTGGATTAAGGAGAGGCTTGTACGTGAGCT
AGAACTGGTTGGTAGGTACGGGCTGCGTAACAAGCGTGAGCTATGGAAGCTTGAGACTCTTGCTCGCTACTTCCGTCACC
GTGCGCGTTCGCTGCTAGCTCTCCCACCCGAGGTACGTGAAAAGGAAGAAAAGGCACTGCTGGCAAGGCTTAATGAGCTA
GGTGTGCTGCCGGAGAATGCAACGCTTGACGACGTACTGAACCTAACAGCAGAGCACTTCCTCGAGAGGAGGCTACAAAC
AATAGTCTACAAGAAGGGCCTAGCCAGGACAATCTACGAGGCACGTCAGCTCATAGTGCATGGTCATATAGCTATTGCTG
GTCGGAAGATACGTAGCCCAGGCTACCTGGTTAAGAAGGACGAGGAGGACCTGGTCGACTACGCGCCCACAAGCCCATAT
GCAAAGCGTAGACTTGAAGAGCAGGTGCAGCAGGAGGAGGCAGCTAGCTGA

Upstream 100 bases:

>100_bases
CTCGGCCTCAAGGTGCGTGGCCAGAGGACAGCCACAACTGGCCGTATTGGTATGACCATTGGTGTGAGGAAGGGCAAGAA
GTAATCTCGGGGTGTGAGCC

Downstream 100 bases:

>100_bases
AGAGGGGTGATACACGGTGGTGTTCTCGGCTCGCGAGATTAAGTGGGGTGTAGCCCACATATACTCGAGCTACAACAACA
CGATAATACACATCACAGAC

Product: 30S ribosomal protein S4P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MGDPKKPRKKWMGPKHPWIKERLVRELELVGRYGLRNKRELWKLETLARYFRHRARSLLALPPEVREKEEKALLARLNEL
GVLPENATLDDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLIVHGHIAIAGRKIRSPGYLVKKDEEDLVDYAPTSPY
AKRRLEEQVQQEEAAS

Sequences:

>Translated_176_residues
MGDPKKPRKKWMGPKHPWIKERLVRELELVGRYGLRNKRELWKLETLARYFRHRARSLLALPPEVREKEEKALLARLNEL
GVLPENATLDDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLIVHGHIAIAGRKIRSPGYLVKKDEEDLVDYAPTSPY
AKRRLEEQVQQEEAAS
>Mature_175_residues
GDPKKPRKKWMGPKHPWIKERLVRELELVGRYGLRNKRELWKLETLARYFRHRARSLLALPPEVREKEEKALLARLNELG
VLPENATLDDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLIVHGHIAIAGRKIRSPGYLVKKDEEDLVDYAPTSPYA
KRRLEEQVQQEEAAS

Specific function: With S5 and S12 plays an important role in translational accuracy

COG id: COG0522

COG function: function code J; Ribosomal protein S4 and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain

Homologues:

Organism=Homo sapiens, GI14141193, Length=157, Percent_Identity=43.9490445859873, Blast_Score=116, Evalue=9e-27,
Organism=Homo sapiens, GI8922794, Length=143, Percent_Identity=30.0699300699301, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17535707, Length=151, Percent_Identity=44.3708609271523, Blast_Score=113, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6319666, Length=167, Percent_Identity=43.1137724550898, Blast_Score=120, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6325176, Length=167, Percent_Identity=42.5149700598802, Blast_Score=119, Evalue=3e-28,
Organism=Saccharomyces cerevisiae, GI6321942, Length=159, Percent_Identity=28.9308176100629, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24661711, Length=165, Percent_Identity=42.4242424242424, Blast_Score=115, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24661707, Length=165, Percent_Identity=42.4242424242424, Blast_Score=115, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24661715, Length=134, Percent_Identity=47.7611940298507, Blast_Score=98, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS4_HYPBU (A2BK77)

Other databases:

- EMBL:   CP000493
- RefSeq:   YP_001012733.1
- ProteinModelPortal:   A2BK77
- SMR:   A2BK77
- STRING:   A2BK77
- GeneID:   4782425
- GenomeReviews:   CP000493_GR
- KEGG:   hbu:Hbut_0528
- eggNOG:   arNOG08837
- HOGENOM:   HBG588353
- OMA:   RNKRELW
- PhylomeDB:   A2BK77
- ProtClustDB:   PRK04051
- BioCyc:   HBUT415426:HBUT_0528-MONOMER
- GO:   GO:0006412
- HAMAP:   MF_01306_A
- InterPro:   IPR022801
- InterPro:   IPR005710
- InterPro:   IPR001912
- InterPro:   IPR022802
- InterPro:   IPR018079
- InterPro:   IPR002942
- PANTHER:   PTHR11831
- SMART:   SM00363
- TIGRFAMs:   TIGR01018

Pfam domain/function: PF00163 Ribosomal_S4; PF01479 S4

EC number: NA

Molecular weight: Translated: 20624; Mature: 20493

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS00632 RIBOSOMAL_S4; PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDPKKPRKKWMGPKHPWIKERLVRELELVGRYGLRNKRELWKLETLARYFRHRARSLLA
CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
LPPEVREKEEKALLARLNELGVLPENATLDDVLNLTAEHFLERRLQTIVYKKGLARTIYE
CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARQLIVHGHIAIAGRKIRSPGYLVKKDEEDLVDYAPTSPYAKRRLEEQVQQEEAAS
HHHHHHHHHHHCCCCEECCCCCEEECCHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GDPKKPRKKWMGPKHPWIKERLVRELELVGRYGLRNKRELWKLETLARYFRHRARSLLA
CCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
LPPEVREKEEKALLARLNELGVLPENATLDDVLNLTAEHFLERRLQTIVYKKGLARTIYE
CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARQLIVHGHIAIAGRKIRSPGYLVKKDEEDLVDYAPTSPYAKRRLEEQVQQEEAAS
HHHHHHHHHHHCCCCEECCCCCEEECCHHHHHHCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA