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The map label for this gene is 124027280

Identifier: 124027280

GI number: 124027280

Start: 376366

End: 376947

Strand: Direct

Name: 124027280

Synonym: Hbut_0388

Alternate gene names: NA

Gene position: 376366-376947 (Clockwise)

Preceding gene: 124027278

Following gene: 124027281

Centisome position: 22.58

GC content: 48.63

Gene sequence:

>582_bases
ATGAGCTACGAGAGGATACGCGCCTTCATAGCTGTTGATATTGAAGATCCAAGCATCGTTGCCAAGCTTGTACAGATTAG
GGATAGCTTCGTTGCAACTGGCGCTCCTATGAAGCCCGTGGAAGATCAGAATCTACACATAACACTCCGTTTTCTCGGTA
ACATACCATTAAGTCTTGTAGACGAGATTGAGAAAATAATCCGTGATGCTAAGCCCCGCAGGGTAGTAATAAGGATCCGT
GGTGTTGGCGCGTTTCCCTCACCTGCTAGGCCCAGGGTAGTATGGGTTGGCGTCGAGGAGGGAGAGGGAGCTAAGGAGCT
TGAGAGACTCTATAGAGAGATTGAGCGTGGACTTAGAAGACTTGGATTCAAACCTGAGAGGGAGGAGTTTGTCCCCCATG
TAACACTTGCTAGGCTCAAGGGCTCAAGGAATATTGATAGGGTAGTAAAACTTCTCAACGAACTCGCAGACATCGAAGTT
GGAGAGATCGTGCTAGAGTCCGTGCGGCTTAAGCAGAGCATATTGACGCCACGTGGGCCAATATACAAGACCCTTAGAGA
GGTTAAGGCTGTTGAAGCGTAA

Upstream 100 bases:

>100_bases
CCACCTGGGAGAGCGCTCCCCCATGAGCATATGTATCCAGCTTATATGGTGAGGGTTTATAGGGTTTTGCTACTTTTCAT
AGCTGTGCCGGAGGTGTAGG

Downstream 100 bases:

>100_bases
CCGAGGCGAGATATACTCCCTCATAGCAAGACTGTTCCATACTGGGTTTAAGGGTTACATTGTAGTTATAGAGCGTGGAC
GCGTCTCCGGAACTAGGCTC

Product: 2'-5' RNA ligase, Lig T

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSYERIRAFIAVDIEDPSIVAKLVQIRDSFVATGAPMKPVEDQNLHITLRFLGNIPLSLVDEIEKIIRDAKPRRVVIRIR
GVGAFPSPARPRVVWVGVEEGEGAKELERLYREIERGLRRLGFKPEREEFVPHVTLARLKGSRNIDRVVKLLNELADIEV
GEIVLESVRLKQSILTPRGPIYKTLREVKAVEA

Sequences:

>Translated_193_residues
MSYERIRAFIAVDIEDPSIVAKLVQIRDSFVATGAPMKPVEDQNLHITLRFLGNIPLSLVDEIEKIIRDAKPRRVVIRIR
GVGAFPSPARPRVVWVGVEEGEGAKELERLYREIERGLRRLGFKPEREEFVPHVTLARLKGSRNIDRVVKLLNELADIEV
GEIVLESVRLKQSILTPRGPIYKTLREVKAVEA
>Mature_192_residues
SYERIRAFIAVDIEDPSIVAKLVQIRDSFVATGAPMKPVEDQNLHITLRFLGNIPLSLVDEIEKIIRDAKPRRVVIRIRG
VGAFPSPARPRVVWVGVEEGEGAKELERLYREIERGLRRLGFKPEREEFVPHVTLARLKGSRNIDRVVKLLNELADIEVG
EIVLESVRLKQSILTPRGPIYKTLREVKAVEA

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 21933; Mature: 21802

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYERIRAFIAVDIEDPSIVAKLVQIRDSFVATGAPMKPVEDQNLHITLRFLGNIPLSLV
CCHHHEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCHHHH
DEIEKIIRDAKPRRVVIRIRGVGAFPSPARPRVVWVGVEEGEGAKELERLYREIERGLRR
HHHHHHHHCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
LGFKPEREEFVPHVTLARLKGSRNIDRVVKLLNELADIEVGEIVLESVRLKQSILTPRGP
CCCCCCHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCH
IYKTLREVKAVEA
HHHHHHHHHHCCC
>Mature Secondary Structure 
SYERIRAFIAVDIEDPSIVAKLVQIRDSFVATGAPMKPVEDQNLHITLRFLGNIPLSLV
CHHHEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCHHHH
DEIEKIIRDAKPRRVVIRIRGVGAFPSPARPRVVWVGVEEGEGAKELERLYREIERGLRR
HHHHHHHHCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
LGFKPEREEFVPHVTLARLKGSRNIDRVVKLLNELADIEVGEIVLESVRLKQSILTPRGP
CCCCCCHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCH
IYKTLREVKAVEA
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]