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The map label for this gene is yggB [C]

Identifier: 124027254

GI number: 124027254

Start: 347095

End: 347997

Strand: Direct

Name: yggB [C]

Synonym: Hbut_0357

Alternate gene names: 124027254

Gene position: 347095-347997 (Clockwise)

Preceding gene: 124027253

Following gene: 124027255

Centisome position: 20.82

GC content: 47.95

Gene sequence:

>903_bases
ATGGGCCAACAGGATGGATTGATAGCTGGTCTAGAGGCATATGCCGGTAAGATACTTGCATCCATGGCGATAATAGTAGC
AACAGTCTTCATAGCAGCAATGGCAAAGCATGTTATAAGAAGGAGTCTACAGCAACGGCTACCCCTCCACATCTACAAGA
CAATAGAAAACATAGTCTTCTACAGTATAGTTGCAGCAGGGGCCATATCTATACTAGGCCTATTCGGCGTCAGCCTCTCC
GGCCTAATAGTTGCAGGCGGGTTCGCAGGCCTGGTCGTAGGTCTTGCCAGCCAGCAGACAATCTCAAACCTCGTTAGCGG
TATCTTCCTACTAATAGAGCAGCCGCTCCGTGTGGGAGACCCAGTAAACATAGACAATGTTGGCGGCATCGTGGCAGACA
TAGGCATACTCTCGACGAGAATAAGAACTTGGGATGGCTACATTGTACGGATACCAAACTCAAAAGTGTTCGACGCAAAA
ATAGAAAACTACCAACGCACCAAAGCCAGGAGAGTCGAGTACGAGGTCGGGATAAGCTACCGGAGCGACATAGAGAAAGC
CATTGAAGCCCTCAGAAAGATGATTGAGGAGCATCCCTACTGCCTCGTAAATCCCGGCCCACAAATATTCGTGGACCGCT
ATGCCGATTCAGCCGTAATCCTCAAGATTCGGTGTTGGACCCCGCCGCAGGTTTGGTTTAACACCAAGATAGAACTACAG
ACGATGACAAAGAAGGTACTGGAAGAAGCTGGTGTCGAGATACCATTCCCACAGCTAGATCTACACATAAAGGATTCAAC
AACGATACCAGTAGAGTTCTCGCCTATGGAGAGAGAAAAGGAACAAAACCAAGAGAGCATAAGAGAAGACAATAAAAACA
CAAGCATGGTAGGAGACTCCTAG

Upstream 100 bases:

>100_bases
TAGACCAAACGTGGAGGATCTGAGACCGCTAGGTGCTAGAATGCACTTGCCACGCATCCCCATAACTCAGACGTTCGTAA
CCCCCCTCGGGTGACCATGC

Downstream 100 bases:

>100_bases
TATTATATCAACAATATGGATGATGACCTTTCGGTCGCCCCGAAGCCAGTCTCGGTGTGGACATTTCCTCCCTCTGACCG
GGGGGTTCCCACTTGTGGTC

Product: mechanosensitive ion channel, MS-channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MGQQDGLIAGLEAYAGKILASMAIIVATVFIAAMAKHVIRRSLQQRLPLHIYKTIENIVFYSIVAAGAISILGLFGVSLS
GLIVAGGFAGLVVGLASQQTISNLVSGIFLLIEQPLRVGDPVNIDNVGGIVADIGILSTRIRTWDGYIVRIPNSKVFDAK
IENYQRTKARRVEYEVGISYRSDIEKAIEALRKMIEEHPYCLVNPGPQIFVDRYADSAVILKIRCWTPPQVWFNTKIELQ
TMTKKVLEEAGVEIPFPQLDLHIKDSTTIPVEFSPMEREKEQNQESIREDNKNTSMVGDS

Sequences:

>Translated_300_residues
MGQQDGLIAGLEAYAGKILASMAIIVATVFIAAMAKHVIRRSLQQRLPLHIYKTIENIVFYSIVAAGAISILGLFGVSLS
GLIVAGGFAGLVVGLASQQTISNLVSGIFLLIEQPLRVGDPVNIDNVGGIVADIGILSTRIRTWDGYIVRIPNSKVFDAK
IENYQRTKARRVEYEVGISYRSDIEKAIEALRKMIEEHPYCLVNPGPQIFVDRYADSAVILKIRCWTPPQVWFNTKIELQ
TMTKKVLEEAGVEIPFPQLDLHIKDSTTIPVEFSPMEREKEQNQESIREDNKNTSMVGDS
>Mature_299_residues
GQQDGLIAGLEAYAGKILASMAIIVATVFIAAMAKHVIRRSLQQRLPLHIYKTIENIVFYSIVAAGAISILGLFGVSLSG
LIVAGGFAGLVVGLASQQTISNLVSGIFLLIEQPLRVGDPVNIDNVGGIVADIGILSTRIRTWDGYIVRIPNSKVFDAKI
ENYQRTKARRVEYEVGISYRSDIEKAIEALRKMIEEHPYCLVNPGPQIFVDRYADSAVILKIRCWTPPQVWFNTKIELQT
MTKKVLEEAGVEIPFPQLDLHIKDSTTIPVEFSPMEREKEQNQESIREDNKNTSMVGDS

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=255, Percent_Identity=31.7647058823529, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1787591, Length=200, Percent_Identity=31.5, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1786670, Length=213, Percent_Identity=30.5164319248826, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI2367355, Length=212, Percent_Identity=22.1698113207547, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 33228; Mature: 33097

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS01246 UPF0003

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQQDGLIAGLEAYAGKILASMAIIVATVFIAAMAKHVIRRSLQQRLPLHIYKTIENIVF
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
YSIVAAGAISILGLFGVSLSGLIVAGGFAGLVVGLASQQTISNLVSGIFLLIEQPLRVGD
HHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC
PVNIDNVGGIVADIGILSTRIRTWDGYIVRIPNSKVFDAKIENYQRTKARRVEYEVGISY
CCCCCCCCHHHHHHHHHHHHEEECCCEEEECCCCCEEHHHHHHHHHHHHHHEEEEECCCH
RSDIEKAIEALRKMIEEHPYCLVNPGPQIFVDRYADSAVILKIRCWTPPQVWFNTKIELQ
HHHHHHHHHHHHHHHHHCCEEEECCCCCEEEECCCCCEEEEEEEECCCCCEEECCEEHHH
TMTKKVLEEAGVEIPFPQLDLHIKDSTTIPVEFSPMEREKEQNQESIREDNKNTSMVGDS
HHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
GQQDGLIAGLEAYAGKILASMAIIVATVFIAAMAKHVIRRSLQQRLPLHIYKTIENIVF
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
YSIVAAGAISILGLFGVSLSGLIVAGGFAGLVVGLASQQTISNLVSGIFLLIEQPLRVGD
HHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC
PVNIDNVGGIVADIGILSTRIRTWDGYIVRIPNSKVFDAKIENYQRTKARRVEYEVGISY
CCCCCCCCHHHHHHHHHHHHEEECCCEEEECCCCCEEHHHHHHHHHHHHHHEEEEECCCH
RSDIEKAIEALRKMIEEHPYCLVNPGPQIFVDRYADSAVILKIRCWTPPQVWFNTKIELQ
HHHHHHHHHHHHHHHHHCCEEEECCCCCEEEECCCCCEEEEEEEECCCCCEEECCEEHHH
TMTKKVLEEAGVEIPFPQLDLHIKDSTTIPVEFSPMEREKEQNQESIREDNKNTSMVGDS
HHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]