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The map label for this gene is yggB [C]

Identifier: 124027247

GI number: 124027247

Start: 338311

End: 339204

Strand: Reverse

Name: yggB [C]

Synonym: Hbut_0350

Alternate gene names: 124027247

Gene position: 339204-338311 (Counterclockwise)

Preceding gene: 124027249

Following gene: 124027246

Centisome position: 20.35

GC content: 54.59

Gene sequence:

>894_bases
TTGGCTGCTGAGTCGTTGGCGGCGCTGCTGGAGACGGTGGGCAGCTATATTTACAAGATCGTTGTCTTCTCGGTTGTTAT
GGTTGCTGGTATAGCGGTCTCCATGCTTATACGTAGGATGATTAGGCGTACGCTGGAGTTTAGCCAGTTTCCCCATACTG
TCGTGGATATAGCGTCGAAGATGGTTTACTACCTCTTGGTCGCCCTGGCAGGTGTTATAGCCCTTGGTGTCGCTGGGTTT
GATGTGACAGGTTTCGCGTTTGCGGGCAGCTTGATAGGTGTTGCGCTGGGCTTTGCCAGCCAGACCGTGGCTTCGAACTT
CTTTAGCGGCCTATTCCTCTACTTTGACAAGCCGCTAAAGCCGGGGGACATGGTTGAGCTGCCTGACCTTGGCATAATGG
GGGTTGTGGAGGATATCACTCTGTTCTCCACGAGGATAACAACGCTTGATGGGCTCAAGGTGAGGATACCCAACGAGAGC
ATATTCCGTAGCGTGATAAAGAACCTTTACAGCCACCAGGCCCGGAGGGTTGAATACCTGGTGGGCATAAGCTACTCCAG
CGACATAGATGTTGCACGTGAGACAATATTCAGGATACTAGAGGATCATCCATGGGTTCTAGCAGAGCCCAAGCCGGTAG
TCTATGTCGAGGAGCTGGGCGATAGTGCCGTGGTGCTGAGGGTTATATTTTGGACTCCAAGCACCAAGTGGCTGCGCGTC
CGCTGGGAGTTGCTGGAGAAGATCAAGAAGGCCCTTGATGAGGCAGGTGTGGAGATACCGTTCCCCCAGAGGGTTGTATG
GCTCCGTCTCCCAGAGGCTGGAGCGGCGAGCCTGGGGGTGTCCGGGAGGATTGGGGGAGAAGGATTACTGGCTGAGACTG
GCGAGGGCGCTTAG

Upstream 100 bases:

>100_bases
TCGCCTCTGGCTGTTTGTAGCGTTACTTGCTTCCGTGTTGTGGGCTGGGGGTTAAACTGGGATCTCGCGGGCTGATTGTG
TTTTGTGGGATGGTGTAGGG

Downstream 100 bases:

>100_bases
GAGCGAGCTAGACTCCTCGCTGCGCAGCTGGGCTGGGCTCCCGGTTGTAGACTACTTCATAGGGTTCCAATACGCCTATG
TCCAGCTCGAAGGCGGTTGG

Product: mechanosensitive ion channel, M-S channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MAAESLAALLETVGSYIYKIVVFSVVMVAGIAVSMLIRRMIRRTLEFSQFPHTVVDIASKMVYYLLVALAGVIALGVAGF
DVTGFAFAGSLIGVALGFASQTVASNFFSGLFLYFDKPLKPGDMVELPDLGIMGVVEDITLFSTRITTLDGLKVRIPNES
IFRSVIKNLYSHQARRVEYLVGISYSSDIDVARETIFRILEDHPWVLAEPKPVVYVEELGDSAVVLRVIFWTPSTKWLRV
RWELLEKIKKALDEAGVEIPFPQRVVWLRLPEAGAASLGVSGRIGGEGLLAETGEGA

Sequences:

>Translated_297_residues
MAAESLAALLETVGSYIYKIVVFSVVMVAGIAVSMLIRRMIRRTLEFSQFPHTVVDIASKMVYYLLVALAGVIALGVAGF
DVTGFAFAGSLIGVALGFASQTVASNFFSGLFLYFDKPLKPGDMVELPDLGIMGVVEDITLFSTRITTLDGLKVRIPNES
IFRSVIKNLYSHQARRVEYLVGISYSSDIDVARETIFRILEDHPWVLAEPKPVVYVEELGDSAVVLRVIFWTPSTKWLRV
RWELLEKIKKALDEAGVEIPFPQRVVWLRLPEAGAASLGVSGRIGGEGLLAETGEGA
>Mature_296_residues
AAESLAALLETVGSYIYKIVVFSVVMVAGIAVSMLIRRMIRRTLEFSQFPHTVVDIASKMVYYLLVALAGVIALGVAGFD
VTGFAFAGSLIGVALGFASQTVASNFFSGLFLYFDKPLKPGDMVELPDLGIMGVVEDITLFSTRITTLDGLKVRIPNESI
FRSVIKNLYSHQARRVEYLVGISYSSDIDVARETIFRILEDHPWVLAEPKPVVYVEELGDSAVVLRVIFWTPSTKWLRVR
WELLEKIKKALDEAGVEIPFPQRVVWLRLPEAGAASLGVSGRIGGEGLLAETGEGA

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=263, Percent_Identity=31.1787072243346, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1787591, Length=205, Percent_Identity=30.7317073170732, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1786670, Length=274, Percent_Identity=24.4525547445255, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI2367355, Length=261, Percent_Identity=24.904214559387, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 32546; Mature: 32414

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAESLAALLETVGSYIYKIVVFSVVMVAGIAVSMLIRRMIRRTLEFSQFPHTVVDIASK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
MVYYLLVALAGVIALGVAGFDVTGFAFAGSLIGVALGFASQTVASNFFSGLFLYFDKPLK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PGDMVELPDLGIMGVVEDITLFSTRITTLDGLKVRIPNESIFRSVIKNLYSHQARRVEYL
CCCCEECCCCCHHHHHHHHHHHHHHHHEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHE
VGISYSSDIDVARETIFRILEDHPWVLAEPKPVVYVEELGDSAVVLRVIFWTPSTKWLRV
EECCCCCCHHHHHHHHHHHHHCCCEEEECCCCEEEHHHCCCCEEEEEEEEECCCCHHHHH
RWELLEKIKKALDEAGVEIPFPQRVVWLRLPEAGAASLGVSGRIGGEGLLAETGEGA
HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AAESLAALLETVGSYIYKIVVFSVVMVAGIAVSMLIRRMIRRTLEFSQFPHTVVDIASK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
MVYYLLVALAGVIALGVAGFDVTGFAFAGSLIGVALGFASQTVASNFFSGLFLYFDKPLK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PGDMVELPDLGIMGVVEDITLFSTRITTLDGLKVRIPNESIFRSVIKNLYSHQARRVEYL
CCCCEECCCCCHHHHHHHHHHHHHHHHEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHE
VGISYSSDIDVARETIFRILEDHPWVLAEPKPVVYVEELGDSAVVLRVIFWTPSTKWLRV
EECCCCCCHHHHHHHHHHHHHCCCEEEECCCCEEEHHHCCCCEEEEEEEEECCCCHHHHH
RWELLEKIKKALDEAGVEIPFPQRVVWLRLPEAGAASLGVSGRIGGEGLLAETGEGA
HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]