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The map label for this gene is tdcF [C]

Identifier: 124027114

GI number: 124027114

Start: 199403

End: 199804

Strand: Reverse

Name: tdcF [C]

Synonym: Hbut_0217

Alternate gene names: 124027114

Gene position: 199804-199403 (Counterclockwise)

Preceding gene: 124027115

Following gene: 124027113

Centisome position: 11.98

GC content: 55.97

Gene sequence:

>402_bases
GTGGCGTCCAAGCAGGTTGTACGTACTGACAAGGCTCCCGCACCTGTTGGGCCTTATAGCCAGGCTATCCTTGCTGGTGG
CTGGCTCTTCATCTCCGGTCAAATACCGATTGACCCCTCCACCGGGGAGATGGTTGAGGGGAGTTTCGAGGAGAAAGTGC
GCCGCGTCCTAGAGAACATTAAGGCTATTGTTGAGGCTGCGGGGGGTTCGCTGGACGACATTGTTAAGGTGACCGTGTAC
CTCCGCGACATAAGCAGGTTCGCCGAGTTCAACAAGATCTATAGCGAGTACTTTAGGGAGAACCCTCCGGCAAGGGTCGT
GGTTGAGGTTTCCAATTTGCCGAAGAATGCGGAGCTAGAGGTTGAGGCCATAGCCTACCTGGGTGACGGGAAGCGTGGCT
GA

Upstream 100 bases:

>100_bases
CATTGGCTTCTGACACGCCTTTCTTGGTGTCCCGGTTGTGGGAACCTCATACGTTAAGATTCTTAGTGCTGAAACCATCA
CTACCGCGTGGTGAGGCTGT

Downstream 100 bases:

>100_bases
AGCAGTCCCGAGCGATACGCGTGAGCTTGTGAGGCTCGTCTACGAGGAGTCGCTGAAGGCTCGGGAGATAGTGTCGCAGT
ATGCTCACCATACGCCTCTC

Product: YjgH/F family protein - putative translation initiation inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MASKQVVRTDKAPAPVGPYSQAILAGGWLFISGQIPIDPSTGEMVEGSFEEKVRRVLENIKAIVEAAGGSLDDIVKVTVY
LRDISRFAEFNKIYSEYFRENPPARVVVEVSNLPKNAELEVEAIAYLGDGKRG

Sequences:

>Translated_133_residues
MASKQVVRTDKAPAPVGPYSQAILAGGWLFISGQIPIDPSTGEMVEGSFEEKVRRVLENIKAIVEAAGGSLDDIVKVTVY
LRDISRFAEFNKIYSEYFRENPPARVVVEVSNLPKNAELEVEAIAYLGDGKRG
>Mature_132_residues
ASKQVVRTDKAPAPVGPYSQAILAGGWLFISGQIPIDPSTGEMVEGSFEEKVRRVLENIKAIVEAAGGSLDDIVKVTVYL
RDISRFAEFNKIYSEYFRENPPARVVVEVSNLPKNAELEVEAIAYLGDGKRG

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=44.8, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=44.8, Blast_Score=117, Evalue=2e-28,
Organism=Escherichia coli, GI87082396, Length=124, Percent_Identity=45.9677419354839, Blast_Score=113, Evalue=5e-27,
Organism=Escherichia coli, GI1787245, Length=125, Percent_Identity=28, Blast_Score=77, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI25148896, Length=127, Percent_Identity=38.5826771653543, Blast_Score=110, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI71982075, Length=127, Percent_Identity=38.5826771653543, Blast_Score=110, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI71982068, Length=127, Percent_Identity=38.5826771653543, Blast_Score=109, Evalue=4e-25,
Organism=Saccharomyces cerevisiae, GI6322138, Length=119, Percent_Identity=45.3781512605042, Blast_Score=111, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=47, Blast_Score=104, Evalue=5e-24,
Organism=Drosophila melanogaster, GI19921376, Length=125, Percent_Identity=35.2, Blast_Score=100, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14557; Mature: 14426

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASKQVVRTDKAPAPVGPYSQAILAGGWLFISGQIPIDPSTGEMVEGSFEEKVRRVLENI
CCCCCCCCCCCCCCCCCCCHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
KAIVEAAGGSLDDIVKVTVYLRDISRFAEFNKIYSEYFRENPPARVVVEVSNLPKNAELE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEE
VEAIAYLGDGKRG
EEEEEEECCCCCC
>Mature Secondary Structure 
ASKQVVRTDKAPAPVGPYSQAILAGGWLFISGQIPIDPSTGEMVEGSFEEKVRRVLENI
CCCCCCCCCCCCCCCCCCHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
KAIVEAAGGSLDDIVKVTVYLRDISRFAEFNKIYSEYFRENPPARVVVEVSNLPKNAELE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEE
VEAIAYLGDGKRG
EEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]