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The map label for this gene is rfaE [C]

Identifier: 124026962

GI number: 124026962

Start: 49085

End: 49810

Strand: Direct

Name: rfaE [C]

Synonym: Hbut_0060

Alternate gene names: 124026962

Gene position: 49085-49810 (Clockwise)

Preceding gene: 124026961

Following gene: 124026965

Centisome position: 2.94

GC content: 53.99

Gene sequence:

>726_bases
TTGCCTAGAAGGATCGAAGACCTGCCTCCTATGGAACGAGTAGATGCATACATCATTAATGTTGAGAGAGTTATAGAGAA
GCTCAGGGGCAAAGTTAGTGGTAGTGTTGCAAAAATTGTGGAGCTAGCTGCAGCCTACGCCAATGATGCAAGGTACTACC
TGGAGAAGGGTGATGTCTTTACAGCTCTTGCCGATATAGCCTATGCTGAGGGTCTTCTCGATGCGCTGCGGTGGCTTGGC
CTTGCAGAGTTTAGCTGGGAGCAAACAAGCGCGATTGCCTCGCGGCCAAAGGTGTTGGTTGCTGGTACGTTCGACATAAT
CCATCCGGGCCACATTACGCTTCTAAGGGAGGCCTGGCTGCGGGGCAGAGTATACGTTGTTGTCGCCCGTGACGAGACTG
TCAAGAAATTCAAGGGTAGGCCGCCAGTAGTCCCCGAGGAGCAGCGTCTAAGCGTGGTCGGGGCGATGCGTTATGTGTAT
AAGGCGATGCTGGGTAGTAGAAGGGATGTGCTAGAGCCACTCCTCGAGGTTAAGCCTGACATAGTGCTTCTTGGTCCGGA
TCAATGGGCTGACGAGGATTGGCTGCGTGTAAGGCTCGAGGAGCATGGTTTGAGGCCGCGAATTGAGAGGCTGCGGGCTA
AGCTGGACTGTCCACTCTGCAGCTCTACATCGATAATATGTAGGGCAACGGAGCTGGCTTCGGCGACCGGTATTTGCCGG
CGCTAG

Upstream 100 bases:

>100_bases
GCTGACCTCGACTGGTTAGAGTCTCTTGGCTCAGTGTAGTGGGTGAAGCCATATAGCATGCCTTGCAGCAGCATACAAGC
CCCTTTTGGGGCAAGAAGGC

Downstream 100 bases:

>100_bases
TAGCCCTCCACGAGTAATGAATATATCCTCTTTAGCTCCCGGATAGGGTCTGGTGCATAGTCTACGCGCAAGTCTATAAC
ACGGTCATAGTATGGTGCAT

Product: cytidylyl transferase, TagD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MPRRIEDLPPMERVDAYIINVERVIEKLRGKVSGSVAKIVELAAAYANDARYYLEKGDVFTALADIAYAEGLLDALRWLG
LAEFSWEQTSAIASRPKVLVAGTFDIIHPGHITLLREAWLRGRVYVVVARDETVKKFKGRPPVVPEEQRLSVVGAMRYVY
KAMLGSRRDVLEPLLEVKPDIVLLGPDQWADEDWLRVRLEEHGLRPRIERLRAKLDCPLCSSTSIICRATELASATGICR
R

Sequences:

>Translated_241_residues
MPRRIEDLPPMERVDAYIINVERVIEKLRGKVSGSVAKIVELAAAYANDARYYLEKGDVFTALADIAYAEGLLDALRWLG
LAEFSWEQTSAIASRPKVLVAGTFDIIHPGHITLLREAWLRGRVYVVVARDETVKKFKGRPPVVPEEQRLSVVGAMRYVY
KAMLGSRRDVLEPLLEVKPDIVLLGPDQWADEDWLRVRLEEHGLRPRIERLRAKLDCPLCSSTSIICRATELASATGICR
R
>Mature_240_residues
PRRIEDLPPMERVDAYIINVERVIEKLRGKVSGSVAKIVELAAAYANDARYYLEKGDVFTALADIAYAEGLLDALRWLGL
AEFSWEQTSAIASRPKVLVAGTFDIIHPGHITLLREAWLRGRVYVVVARDETVKKFKGRPPVVPEEQRLSVVGAMRYVYK
AMLGSRRDVLEPLLEVKPDIVLLGPDQWADEDWLRVRLEEHGLRPRIERLRAKLDCPLCSSTSIICRATELASATGICRR

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0615

COG function: function code MI; Cytidylyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004821
- InterPro:   IPR004820
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01467 CTP_transf_2 [H]

EC number: 2.7.-.- [C]

Molecular weight: Translated: 27220; Mature: 27089

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRRIEDLPPMERVDAYIINVERVIEKLRGKVSGSVAKIVELAAAYANDARYYLEKGDVF
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHEEHCCCCHH
TALADIAYAEGLLDALRWLGLAEFSWEQTSAIASRPKVLVAGTFDIIHPGHITLLREAWL
HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHCCCCEEEEECEEEECCCHHHHHHHHHH
RGRVYVVVARDETVKKFKGRPPVVPEEQRLSVVGAMRYVYKAMLGSRRDVLEPLLEVKPD
CCCEEEEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
IVLLGPDQWADEDWLRVRLEEHGLRPRIERLRAKLDCPLCSSTSIICRATELASATGICR
EEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHCCCCC
R
C
>Mature Secondary Structure 
PRRIEDLPPMERVDAYIINVERVIEKLRGKVSGSVAKIVELAAAYANDARYYLEKGDVF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHEEHCCCCHH
TALADIAYAEGLLDALRWLGLAEFSWEQTSAIASRPKVLVAGTFDIIHPGHITLLREAWL
HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHCCCCEEEEECEEEECCCHHHHHHHHHH
RGRVYVVVARDETVKKFKGRPPVVPEEQRLSVVGAMRYVYKAMLGSRRDVLEPLLEVKPD
CCCEEEEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
IVLLGPDQWADEDWLRVRLEEHGLRPRIERLRAKLDCPLCSSTSIICRATELASATGICR
EEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]