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The map label for this gene is ydjX [C]

Identifier: 124026857

GI number: 124026857

Start: 1809257

End: 1809898

Strand: Reverse

Name: ydjX [C]

Synonym: NATL1_21521

Alternate gene names: 124026857

Gene position: 1809898-1809257 (Counterclockwise)

Preceding gene: 124026858

Following gene: 124026853

Centisome position: 97.06

GC content: 33.33

Gene sequence:

>642_bases
TTGATTTATTTAGAACTTATGACTCAAAACATAGAAACTCTAGTCAATAATTTTATTCCTTTTTTAAGCAGTCCTTTAGG
AATTTTGGGTTTTGCTTTGGTTTATGTTTTTTGGGTGTCTTGCTTGCTGCCAGGCTCCTGGCTTTCCATGTTGTCTGGCT
TTCTTTATGGAACCTGGCTTGGAAGTTCGGTTGTTTTTATAGGTGCTTTTGTTGGAGCTCATCTAACTTTTTATTTAGGG
AGAACTTTTTTAAAAGAATGGGCTCAAAGCAAGGTCTCGAATTTTCCAAAAGTTCAAATTATGGAGAAGGCTGTTAAACG
CGAGGGTCTGAAAGTCATTCTTTTAACTAGACTTTCTCCTCTTTTTCCATTTGGCTTACTTAATTTTACTTATGGCTTGA
GCGATGTAAAAGTTCGTGATTTTACTATTGGAATGTTTGGTATATTACCTGGCACAATTTTATATTGCAGCTTAGGTTCC
TTAGCACTTAAAGTTTCAAGTTTTGGCGAAGTACTTTCTGGAAGATCTGATACAAGTTCATTTATTTGGAGCTTAATTAG
TATCTTTTCAACAATTTTAATTGTTATTTTAGTTTTACGTTCAACAAGAAAAATAAATCAGGATTCGAAATCTTTAGATT
AA

Upstream 100 bases:

>100_bases
TTGATAAAGCTCCCAAAGATGTTGTTGAAGAATGCAGAGCAAACTTAACGGAGTCAGAAGCTCAAGTCCGTCTAGTCAAA
GAGCGTCTAATGGGATTGGA

Downstream 100 bases:

>100_bases
TCCTCAGCTGTTAAATTCCAATCTTTAATCGTTGCAAATAGGATAAACCAATACAGTCTTATTCGATTAAATATACCTTT
TTTGGAAGCCAGCATTTCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MIYLELMTQNIETLVNNFIPFLSSPLGILGFALVYVFWVSCLLPGSWLSMLSGFLYGTWLGSSVVFIGAFVGAHLTFYLG
RTFLKEWAQSKVSNFPKVQIMEKAVKREGLKVILLTRLSPLFPFGLLNFTYGLSDVKVRDFTIGMFGILPGTILYCSLGS
LALKVSSFGEVLSGRSDTSSFIWSLISIFSTILIVILVLRSTRKINQDSKSLD

Sequences:

>Translated_213_residues
MIYLELMTQNIETLVNNFIPFLSSPLGILGFALVYVFWVSCLLPGSWLSMLSGFLYGTWLGSSVVFIGAFVGAHLTFYLG
RTFLKEWAQSKVSNFPKVQIMEKAVKREGLKVILLTRLSPLFPFGLLNFTYGLSDVKVRDFTIGMFGILPGTILYCSLGS
LALKVSSFGEVLSGRSDTSSFIWSLISIFSTILIVILVLRSTRKINQDSKSLD
>Mature_213_residues
MIYLELMTQNIETLVNNFIPFLSSPLGILGFALVYVFWVSCLLPGSWLSMLSGFLYGTWLGSSVVFIGAFVGAHLTFYLG
RTFLKEWAQSKVSNFPKVQIMEKAVKREGLKVILLTRLSPLFPFGLLNFTYGLSDVKVRDFTIGMFGILPGTILYCSLGS
LALKVSSFGEVLSGRSDTSSFIWSLISIFSTILIVILVLRSTRKINQDSKSLD

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Homo sapiens, GI223555958, Length=185, Percent_Identity=26.4864864864865, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87081964, Length=131, Percent_Identity=31.2977099236641, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 23679; Mature: 23679

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYLELMTQNIETLVNNFIPFLSSPLGILGFALVYVFWVSCLLPGSWLSMLSGFLYGTWL
CEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GSSVVFIGAFVGAHLTFYLGRTFLKEWAQSKVSNFPKVQIMEKAVKREGLKVILLTRLSP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEHHHHCCH
LFPFGLLNFTYGLSDVKVRDFTIGMFGILPGTILYCSLGSLALKVSSFGEVLSGRSDTSS
HHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
FIWSLISIFSTILIVILVLRSTRKINQDSKSLD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIYLELMTQNIETLVNNFIPFLSSPLGILGFALVYVFWVSCLLPGSWLSMLSGFLYGTWL
CEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GSSVVFIGAFVGAHLTFYLGRTFLKEWAQSKVSNFPKVQIMEKAVKREGLKVILLTRLSP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEHHHHCCH
LFPFGLLNFTYGLSDVKVRDFTIGMFGILPGTILYCSLGSLALKVSSFGEVLSGRSDTSS
HHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
FIWSLISIFSTILIVILVLRSTRKINQDSKSLD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]