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The map label for this gene is recF [H]

Identifier: 124026724

GI number: 124026724

Start: 1661773

End: 1662819

Strand: Reverse

Name: recF [H]

Synonym: NATL1_20191

Alternate gene names: 124026724

Gene position: 1662819-1661773 (Counterclockwise)

Preceding gene: 124026725

Following gene: 124026723

Centisome position: 89.17

GC content: 37.25

Gene sequence:

>1047_bases
TTGGAGTTAACTGAAAACAGATTGATAGTCATAGGTCAAAATGGAGTTGGTAAATCTAATCTTCTTGAATCCATAGAGCT
CCTGTCTAGTTTACGTTCTCATCGATCGAATCGGAATCAAGATTTAATTTATTGGGATCAAGATCAGGCTTGCTTATCTG
CAATGATTGAAGATGATCAAAAACTTTCTTTAGAGCTAAATAGAAAAGGTGGAAGAAAAGCCTACAAAAATGACAAACTT
TTAAATCGTCAAATTGATTTGATTGGACCAATGAGAAGCGTAGGCTTTAGTGCTCTTGATCTAGAATTAATTAGAGGAGA
ACCTTCTCTTAGAAGACATTGGCTGGATAGAATTGTCCAGCAACTGGAACCTATTTATTCTGATTTGATCGGAAGGTTTT
CTAGATTGCTGAGGCAAAGAAGTCAGCTTTGGCGTAATTTGAGTCTTGAATCGAGCAAGGATCAAAATATTTTATTGGAT
TCTTTTGATATGCAAATGGCGTTAGTGAGTACAAGAATTCATCGAAGACGTAGGCGTATTTTAGATCGTCTACTTCCCAT
CGCCTCAAGCTGGCAACAACATCTTAGTAACAGTCAAGAGAAGCTAGATATTACATATTTGCCAGGTAGTAAACTAGAGG
GTGAAGAGAGTGAAAGGGTTTGGAGGGAGAGTATTGAACGTCAACTTTTAGAAATGAGGTCTGAGGAAGAGATAACGGGT
AATTGTAGAGTCGGCCCTCATCGTGATGATGTACAGTTTTCAATAAATGATGTAGATGCCAGACGTTTTGGTTCTGCTGG
TCAGCAGAGAACTATTGTATTGTCTTTGAAATTGGCCGAATTAGAATTAATTAAAATGGTTTATGGTAAAGCTCCAATAT
TGCTTTTAGATGATGTTTTGGCTGAGCTAGATCCCAAGCGTCAATTATTGCTTTTAGAGGCTGTTGGTCAAAAACATCAA
TGTTTAATCAGTGCAACACATCTGGAATCTTTTGAGGGTGAATGGGTACGAAACTCACAATTAATGGAATTGGATTCTTT
TAGTTGA

Upstream 100 bases:

>100_bases
CTAGACCTTATTAAAATTAGCTTACATACAAATTCCATAAAGAAACATTCAACTTCACCAGTTAGAACTTAATAATTTTC
GAAATTATCGAGGTTTTCAG

Downstream 100 bases:

>100_bases
AACTATTGGTCAGTTATTGTGGAAATGATTTTTGGATAATATGGAACCTTTTTTTTCTGAATTGCATCCAAATCCTGGAT
GGGGTGACTCTTTCAAGTCA

Product: recombination protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MELTENRLIVIGQNGVGKSNLLESIELLSSLRSHRSNRNQDLIYWDQDQACLSAMIEDDQKLSLELNRKGGRKAYKNDKL
LNRQIDLIGPMRSVGFSALDLELIRGEPSLRRHWLDRIVQQLEPIYSDLIGRFSRLLRQRSQLWRNLSLESSKDQNILLD
SFDMQMALVSTRIHRRRRRILDRLLPIASSWQQHLSNSQEKLDITYLPGSKLEGEESERVWRESIERQLLEMRSEEEITG
NCRVGPHRDDVQFSINDVDARRFGSAGQQRTIVLSLKLAELELIKMVYGKAPILLLDDVLAELDPKRQLLLLEAVGQKHQ
CLISATHLESFEGEWVRNSQLMELDSFS

Sequences:

>Translated_348_residues
MELTENRLIVIGQNGVGKSNLLESIELLSSLRSHRSNRNQDLIYWDQDQACLSAMIEDDQKLSLELNRKGGRKAYKNDKL
LNRQIDLIGPMRSVGFSALDLELIRGEPSLRRHWLDRIVQQLEPIYSDLIGRFSRLLRQRSQLWRNLSLESSKDQNILLD
SFDMQMALVSTRIHRRRRRILDRLLPIASSWQQHLSNSQEKLDITYLPGSKLEGEESERVWRESIERQLLEMRSEEEITG
NCRVGPHRDDVQFSINDVDARRFGSAGQQRTIVLSLKLAELELIKMVYGKAPILLLDDVLAELDPKRQLLLLEAVGQKHQ
CLISATHLESFEGEWVRNSQLMELDSFS
>Mature_348_residues
MELTENRLIVIGQNGVGKSNLLESIELLSSLRSHRSNRNQDLIYWDQDQACLSAMIEDDQKLSLELNRKGGRKAYKNDKL
LNRQIDLIGPMRSVGFSALDLELIRGEPSLRRHWLDRIVQQLEPIYSDLIGRFSRLLRQRSQLWRNLSLESSKDQNILLD
SFDMQMALVSTRIHRRRRRILDRLLPIASSWQQHLSNSQEKLDITYLPGSKLEGEESERVWRESIERQLLEMRSEEEITG
NCRVGPHRDDVQFSINDVDARRFGSAGQQRTIVLSLKLAELELIKMVYGKAPILLLDDVLAELDPKRQLLLLEAVGQKHQ
CLISATHLESFEGEWVRNSQLMELDSFS

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP [H]

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001238
- InterPro:   IPR018078 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40321; Mature: 40321

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS00617 RECF_1 ; PS00618 RECF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELTENRLIVIGQNGVGKSNLLESIELLSSLRSHRSNRNQDLIYWDQDQACLSAMIEDDQ
CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHCCCC
KLSLELNRKGGRKAYKNDKLLNRQIDLIGPMRSVGFSALDLELIRGEPSLRRHWLDRIVQ
EEEEEECCCCCCCHHCCCHHHHHHHHHHCCHHHCCCCHHHHHEECCCHHHHHHHHHHHHH
QLEPIYSDLIGRFSRLLRQRSQLWRNLSLESSKDQNILLDSFDMQMALVSTRIHRRRRRI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHH
LDRLLPIASSWQQHLSNSQEKLDITYLPGSKLEGEESERVWRESIERQLLEMRSEEEITG
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
NCRVGPHRDDVQFSINDVDARRFGSAGQQRTIVLSLKLAELELIKMVYGKAPILLLDDVL
CCCCCCCCCCCEEEECCCCHHHHCCCCCCEEEEEEEEHHHHHHHHHHHCCCCHHHHHHHH
AELDPKRQLLLLEAVGQKHQCLISATHLESFEGEWVRNSQLMELDSFS
HHCCCCHHHHHHHHCCCCHHEEEEHHHHHCCCCCHHCCCCCCCCCCCC
>Mature Secondary Structure
MELTENRLIVIGQNGVGKSNLLESIELLSSLRSHRSNRNQDLIYWDQDQACLSAMIEDDQ
CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHCCCC
KLSLELNRKGGRKAYKNDKLLNRQIDLIGPMRSVGFSALDLELIRGEPSLRRHWLDRIVQ
EEEEEECCCCCCCHHCCCHHHHHHHHHHCCHHHCCCCHHHHHEECCCHHHHHHHHHHHHH
QLEPIYSDLIGRFSRLLRQRSQLWRNLSLESSKDQNILLDSFDMQMALVSTRIHRRRRRI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHH
LDRLLPIASSWQQHLSNSQEKLDITYLPGSKLEGEESERVWRESIERQLLEMRSEEEITG
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
NCRVGPHRDDVQFSINDVDARRFGSAGQQRTIVLSLKLAELELIKMVYGKAPILLLDDVL
CCCCCCCCCCCEEEECCCCHHHHCCCCCCEEEEEEEEHHHHHHHHHHHCCCCHHHHHHHH
AELDPKRQLLLLEAVGQKHQCLISATHLESFEGEWVRNSQLMELDSFS
HHCCCCHHHHHHHHCCCCHHEEEEHHHHHCCCCCHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12917641 [H]