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The map label for this gene is 124026716

Identifier: 124026716

GI number: 124026716

Start: 1654438

End: 1655955

Strand: Reverse

Name: 124026716

Synonym: NATL1_20111

Alternate gene names: NA

Gene position: 1655955-1654438 (Counterclockwise)

Preceding gene: 124026718

Following gene: 124026714

Centisome position: 88.8

GC content: 37.75

Gene sequence:

>1518_bases
ATGTCTGAAGAATCTATCATTGTTGTTGGGGGAGGGATAGCTGGCTTAACAGGTGCTGCTCTTCTCTCTAAAGAGGGTTA
TCAGGTAACTTTGGTCGAAGCACATAGTCAATTAGGTGGTTGTGCAGGAACTTTTAAAAGAGGTTCTTATACCTTTGATG
TTGGCGCTACCCAAGTTGCAGGTCTTGAGAGAGGAGGAATTCATCATCGTTTATTTAATTATTTAGATATTCCTTTACCT
GATGCAAAAATTTTGGATCCTGGCTGTTCAGTCACTCTCGGTGATGGGAGTAGGCCAATCAATCTTTGGCATGATCCATT
GAGATGGCAGAAAGAAAGACAAGAACAGTTTCCTGGGAGTGAAATCTTCTGGTCATTATGTTCTAAAATTCATGAAAGTA
ACTGGGAATTTGTCGAAAGAGATCCAATACTTCCGGTAAGAAATTTTTGGGATTTAAGTCAATTAATTAGAGCCATACGT
CCTTCAAATCTTTTTACTGGTTTTCTGAGTAAGTTAACTATTACAGACTTGCTTAAAATAACTGGTTGTCATAAAGATAG
ACGTCTACGAAGTTTTTTAGACCTTCAATTAAAACTTTACTCTCAAGAGCCAGCAAGTAGAACGGCAGCTTTATACGGTG
CAACTGTTCTTCAAATGGCCCAATCTCCTAGAGGTCTATGGCATCTTCATGGATCAATGCAAATTCTTAGCGATTTGTTG
AAAGATAGTTTCTTGAGAGATGGTGGAAGCCTTTTGATTGGGCATAGAGTGACCAAAATAATAAGGAAAGAAAATTCAAA
TATTTTTGATGTCAATGTGATTGATAGAAGAAAGAATTTGATACGGATGAAAGCATCAGATATTGTTTTTAGCTTGCCTC
CTCAATCACTTTTAGATTTAATTCCTATTGATGGAGGTTTATCTACAACATACCGTGAAAGTATAAAAAATTTACCTAAA
CCCAGTGGTGCTATTGTATTTTACGGAGCTCTCCGTCGTGTAGATTTGCCCGTTGATTGTCCAGGTCATATTCAAGTATT
TGATGAGCATTTTGGTTCTTTATTTATTTCTATCAGTATGGAAAATGATCAACGTGCACCAGTTGGGATGGCCACTTTAA
TAGCAAGTGTATTTGTAGATATTGATCAATGGTCTAATCTAGATAGTCAATCATATATCAGAAAAAAAAATGTTGTATCG
AAACAGATTAGAGCTATTTTAGATCACAAGTTTGATTTGCTAGAGACGAGTTGGGATCATCAAGAACTTTCTACCCCAAG
AAGTTTTGAAAGGTGGACTGGACGTCCTAGTGGAATAGTCGGAGGGCTTGGTCAACATCCAGATCAATTTGGTCCTTTTG
GCCTGTCAAGTAGAACCCCTCTCAGAGGTTTATGGCTTTGTGGAGATTCTATATACCCTGGTGAAGGTACCGCTGGCGTA
AGTCAATCAGCTTTGATGGTTGTAAGACAATTATTGGAATCTAAAGGTAGACATCTAAACATCCCTGTCTTTAATTAG

Upstream 100 bases:

>100_bases
TATTTTTTCTATTAGTGAGTTGTTGCTTACTTTATTTGAACTTGAAAGAGCCTTTTGGATTAATTCTTCCATTCACTGTA
TTCTCGCTTGATAATTTTTT

Downstream 100 bases:

>100_bases
TAGGTTTTAAAATGAAATTTTGTCTTTCTTCCTGTGTATTAACTAGTATTTTCTCGAGTTCACTCCAGTTCTCTTCAAGT
AAATATTTTTCAAAAAGATC

Product: phytoene dehydrogenase and related proteins

Products: NA

Alternate protein names: C-3 4' Desaturase CrtD; Phytoene Dehydrogenase; FAD Dependent Oxidoreductase; Carotenoid Isomerase; Carotene Isomerase; Phytoene Dehydrogenase ; Lycopene Cyclase; Phytoene Dehydrogenase-Related Protein; All-Trans-Retinol; Phytoene Dehydrogenase/Carotenoid Isomerase; Phytoene Dehydrogenase And Related Proteins; Phytoene Dehydrogenase And Related Protein; Phytoene Dehydrogenase-Like

Number of amino acids: Translated: 505; Mature: 504

Protein sequence:

>505_residues
MSEESIIVVGGGIAGLTGAALLSKEGYQVTLVEAHSQLGGCAGTFKRGSYTFDVGATQVAGLERGGIHHRLFNYLDIPLP
DAKILDPGCSVTLGDGSRPINLWHDPLRWQKERQEQFPGSEIFWSLCSKIHESNWEFVERDPILPVRNFWDLSQLIRAIR
PSNLFTGFLSKLTITDLLKITGCHKDRRLRSFLDLQLKLYSQEPASRTAALYGATVLQMAQSPRGLWHLHGSMQILSDLL
KDSFLRDGGSLLIGHRVTKIIRKENSNIFDVNVIDRRKNLIRMKASDIVFSLPPQSLLDLIPIDGGLSTTYRESIKNLPK
PSGAIVFYGALRRVDLPVDCPGHIQVFDEHFGSLFISISMENDQRAPVGMATLIASVFVDIDQWSNLDSQSYIRKKNVVS
KQIRAILDHKFDLLETSWDHQELSTPRSFERWTGRPSGIVGGLGQHPDQFGPFGLSSRTPLRGLWLCGDSIYPGEGTAGV
SQSALMVVRQLLESKGRHLNIPVFN

Sequences:

>Translated_505_residues
MSEESIIVVGGGIAGLTGAALLSKEGYQVTLVEAHSQLGGCAGTFKRGSYTFDVGATQVAGLERGGIHHRLFNYLDIPLP
DAKILDPGCSVTLGDGSRPINLWHDPLRWQKERQEQFPGSEIFWSLCSKIHESNWEFVERDPILPVRNFWDLSQLIRAIR
PSNLFTGFLSKLTITDLLKITGCHKDRRLRSFLDLQLKLYSQEPASRTAALYGATVLQMAQSPRGLWHLHGSMQILSDLL
KDSFLRDGGSLLIGHRVTKIIRKENSNIFDVNVIDRRKNLIRMKASDIVFSLPPQSLLDLIPIDGGLSTTYRESIKNLPK
PSGAIVFYGALRRVDLPVDCPGHIQVFDEHFGSLFISISMENDQRAPVGMATLIASVFVDIDQWSNLDSQSYIRKKNVVS
KQIRAILDHKFDLLETSWDHQELSTPRSFERWTGRPSGIVGGLGQHPDQFGPFGLSSRTPLRGLWLCGDSIYPGEGTAGV
SQSALMVVRQLLESKGRHLNIPVFN
>Mature_504_residues
SEESIIVVGGGIAGLTGAALLSKEGYQVTLVEAHSQLGGCAGTFKRGSYTFDVGATQVAGLERGGIHHRLFNYLDIPLPD
AKILDPGCSVTLGDGSRPINLWHDPLRWQKERQEQFPGSEIFWSLCSKIHESNWEFVERDPILPVRNFWDLSQLIRAIRP
SNLFTGFLSKLTITDLLKITGCHKDRRLRSFLDLQLKLYSQEPASRTAALYGATVLQMAQSPRGLWHLHGSMQILSDLLK
DSFLRDGGSLLIGHRVTKIIRKENSNIFDVNVIDRRKNLIRMKASDIVFSLPPQSLLDLIPIDGGLSTTYRESIKNLPKP
SGAIVFYGALRRVDLPVDCPGHIQVFDEHFGSLFISISMENDQRAPVGMATLIASVFVDIDQWSNLDSQSYIRKKNVVSK
QIRAILDHKFDLLETSWDHQELSTPRSFERWTGRPSGIVGGLGQHPDQFGPFGLSSRTPLRGLWLCGDSIYPGEGTAGVS
QSALMVVRQLLESKGRHLNIPVFN

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56247; Mature: 56116

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEESIIVVGGGIAGLTGAALLSKEGYQVTLVEAHSQLGGCAGTFKRGSYTFDVGATQVA
CCCCCEEEEECCHHHHHHHHHHCCCCCEEEEEECHHHHCCCCCCCCCCCEEEECCCHHHC
GLERGGIHHRLFNYLDIPLPDAKILDPGCSVTLGDGSRPINLWHDPLRWQKERQEQFPGS
CCCCCCHHHHHHHHHCCCCCCCEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCH
EIFWSLCSKIHESNWEFVERDPILPVRNFWDLSQLIRAIRPSNLFTGFLSKLTITDLLKI
HHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
TGCHKDRRLRSFLDLQLKLYSQEPASRTAALYGATVLQMAQSPRGLWHLHGSMQILSDLL
HCCCHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
KDSFLRDGGSLLIGHRVTKIIRKENSNIFDVNVIDRRKNLIRMKASDIVFSLPPQSLLDL
HHHHHCCCCCEEHHHHHHHHHHHCCCCEEEEEEHHHHHHHHEEECCCEEEECCHHHHHHH
IPIDGGLSTTYRESIKNLPKPSGAIVFYGALRRVDLPVDCPGHIQVFDEHFGSLFISISM
CCCCCCCCHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCCCCCCHHHHHHCCCEEEEEEEE
ENDQRAPVGMATLIASVFVDIDQWSNLDSQSYIRKKNVVSKQIRAILDHKFDLLETSWDH
CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCH
QELSTPRSFERWTGRPSGIVGGLGQHPDQFGPFGLSSRTPLRGLWLCGDSIYPGEGTAGV
HHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
SQSALMVVRQLLESKGRHLNIPVFN
CHHHHHHHHHHHHCCCCEEECCCCC
>Mature Secondary Structure 
SEESIIVVGGGIAGLTGAALLSKEGYQVTLVEAHSQLGGCAGTFKRGSYTFDVGATQVA
CCCCEEEEECCHHHHHHHHHHCCCCCEEEEEECHHHHCCCCCCCCCCCEEEECCCHHHC
GLERGGIHHRLFNYLDIPLPDAKILDPGCSVTLGDGSRPINLWHDPLRWQKERQEQFPGS
CCCCCCHHHHHHHHHCCCCCCCEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCH
EIFWSLCSKIHESNWEFVERDPILPVRNFWDLSQLIRAIRPSNLFTGFLSKLTITDLLKI
HHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
TGCHKDRRLRSFLDLQLKLYSQEPASRTAALYGATVLQMAQSPRGLWHLHGSMQILSDLL
HCCCHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
KDSFLRDGGSLLIGHRVTKIIRKENSNIFDVNVIDRRKNLIRMKASDIVFSLPPQSLLDL
HHHHHCCCCCEEHHHHHHHHHHHCCCCEEEEEEHHHHHHHHEEECCCEEEECCHHHHHHH
IPIDGGLSTTYRESIKNLPKPSGAIVFYGALRRVDLPVDCPGHIQVFDEHFGSLFISISM
CCCCCCCCHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCCCCCCHHHHHHCCCEEEEEEEE
ENDQRAPVGMATLIASVFVDIDQWSNLDSQSYIRKKNVVSKQIRAILDHKFDLLETSWDH
CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCH
QELSTPRSFERWTGRPSGIVGGLGQHPDQFGPFGLSSRTPLRGLWLCGDSIYPGEGTAGV
HHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
SQSALMVVRQLLESKGRHLNIPVFN
CHHHHHHHHHHHHCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA