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The map label for this gene is clpS [H]

Identifier: 124026645

GI number: 124026645

Start: 1592847

End: 1593218

Strand: Reverse

Name: clpS [H]

Synonym: NATL1_19401

Alternate gene names: 124026645

Gene position: 1593218-1592847 (Counterclockwise)

Preceding gene: 124026646

Following gene: 124026644

Centisome position: 85.44

GC content: 34.41

Gene sequence:

>372_bases
ATGAGTAATATCATGGTAAGTTCCTTGTTAAAAAGTGCTATTCATCTCGACAGTTTAATTATGGTTGATTCTGCAAATCA
AACTGATGGAGATACTGCTGTTATCGATCGGGAAGTTCAGCGAGTTAGGAAAATATCTCCCAAATATAAGGTTTTACTTC
ATAATGATCCAGTTAATACGATGGATTATGTGGTAGATACATTAAGACAGGTAGTTCCACAATTAAGTGAACAGGATGCT
TTGAATATTATGTTGGAAACGCATAATAATGGTGTTGGACTTGTTATTACTTGTGACTTAGAACCTGCTGAGTTTTACTC
TGAATCTTTAAAGGCAAAAGGCTTGACAAGTACAATTGAATTAGAAAGCTGA

Upstream 100 bases:

>100_bases
GCAGTGGATTTGGGGCTGCGGGAGAAGGCTATTTTAGATTGTCTGCCTTCAACAGCAGAGAAAATGTCGAAAAAGCTATG
GAAAGGATCGTAAAACTTAA

Downstream 100 bases:

>100_bases
AATCATCAATTAAAAGTCTGTGGAATAGATGGTTGCATCAAAAGATGCAATGGATACCAACACTAACGCTGTTTTTATTT
TTATATCCAGCAGGATGGAT

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MSNIMVSSLLKSAIHLDSLIMVDSANQTDGDTAVIDREVQRVRKISPKYKVLLHNDPVNTMDYVVDTLRQVVPQLSEQDA
LNIMLETHNNGVGLVITCDLEPAEFYSESLKAKGLTSTIELES

Sequences:

>Translated_123_residues
MSNIMVSSLLKSAIHLDSLIMVDSANQTDGDTAVIDREVQRVRKISPKYKVLLHNDPVNTMDYVVDTLRQVVPQLSEQDA
LNIMLETHNNGVGLVITCDLEPAEFYSESLKAKGLTSTIELES
>Mature_122_residues
SNIMVSSLLKSAIHLDSLIMVDSANQTDGDTAVIDREVQRVRKISPKYKVLLHNDPVNTMDYVVDTLRQVVPQLSEQDAL
NIMLETHNNGVGLVITCDLEPAEFYSESLKAKGLTSTIELES

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation [H]

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719 [H]

Pfam domain/function: PF02617 ClpS [H]

EC number: NA

Molecular weight: Translated: 13631; Mature: 13500

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNIMVSSLLKSAIHLDSLIMVDSANQTDGDTAVIDREVQRVRKISPKYKVLLHNDPVNT
CCCHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCH
MDYVVDTLRQVVPQLSEQDALNIMLETHNNGVGLVITCDLEPAEFYSESLKAKGLTSTIE
HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHHCCCCCCCEEE
LES
ECC
>Mature Secondary Structure 
SNIMVSSLLKSAIHLDSLIMVDSANQTDGDTAVIDREVQRVRKISPKYKVLLHNDPVNT
CCHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCH
MDYVVDTLRQVVPQLSEQDALNIMLETHNNGVGLVITCDLEPAEFYSESLKAKGLTSTIE
HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHHCCCCCCCEEE
LES
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA