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The map label for this gene is rbpD [H]

Identifier: 124026639

GI number: 124026639

Start: 1588663

End: 1588911

Strand: Reverse

Name: rbpD [H]

Synonym: NATL1_19341

Alternate gene names: 124026639

Gene position: 1588911-1588663 (Counterclockwise)

Preceding gene: 124026642

Following gene: 124026638

Centisome position: 85.21

GC content: 38.55

Gene sequence:

>249_bases
ATGACTATTTACATCGGGAATCTCTCGTTTGATGCAGAGGTTGAAGATATTGTTGGTGTCTTTAGCAGTTATGGTGAAGT
CACTAATTGTAAGCTTCCATTAGAAAGAGAAACTGGGAGAAAAAGAGGTTTCGCTTTTGTTGACATGGGCGATGATGCTC
AAGAACAAAAAGCAATCGACGATCTTCAAGATGTGGAATGGATGGGTAGGGCTATTAGAGTTACAAAAGCTAGACCCAAA
AATAATTAA

Upstream 100 bases:

>100_bases
ATTATCCAAATAGCTTTCTTCAAGTTTTGCTTTCTAGCCAAATTATTGAGGTTTTTCCCTTTTCGGACCATTCATTATTA
TTTTATAGGTCCGTTATCCA

Downstream 100 bases:

>100_bases
TTAATTAATTTTAGATTTCAGTCTATTAGCGATTACAGCATTTCCTCAAATTAATGCTGTAATGATTAGAAGTTAAGAGC
GATGACTTTTTAATGCTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 82; Mature: 81

Protein sequence:

>82_residues
MTIYIGNLSFDAEVEDIVGVFSSYGEVTNCKLPLERETGRKRGFAFVDMGDDAQEQKAIDDLQDVEWMGRAIRVTKARPK
NN

Sequences:

>Translated_82_residues
MTIYIGNLSFDAEVEDIVGVFSSYGEVTNCKLPLERETGRKRGFAFVDMGDDAQEQKAIDDLQDVEWMGRAIRVTKARPK
NN
>Mature_81_residues
TIYIGNLSFDAEVEDIVGVFSSYGEVTNCKLPLERETGRKRGFAFVDMGDDAQEQKAIDDLQDVEWMGRAIRVTKARPKN
N

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI17508587, Length=82, Percent_Identity=41.4634146341463, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=38.961038961039, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=36.3636363636364, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9258; Mature: 9126

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIYIGNLSFDAEVEDIVGVFSSYGEVTNCKLPLERETGRKRGFAFVDMGDDAQEQKAID
CEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHH
DLQDVEWMGRAIRVTKARPKNN
HHHHHHHHCCEEEEECCCCCCC
>Mature Secondary Structure 
TIYIGNLSFDAEVEDIVGVFSSYGEVTNCKLPLERETGRKRGFAFVDMGDDAQEQKAID
EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHH
DLQDVEWMGRAIRVTKARPKNN
HHHHHHHHCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]