| Definition | Prochlorococcus marinus str. NATL1A, complete genome. |
|---|---|
| Accession | NC_008819 |
| Length | 1,864,731 |
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The map label for this gene is pkwA [H]
Identifier: 124026613
GI number: 124026613
Start: 1570425
End: 1571501
Strand: Direct
Name: pkwA [H]
Synonym: NATL1_19081
Alternate gene names: 124026613
Gene position: 1570425-1571501 (Clockwise)
Preceding gene: 124026612
Following gene: 124026614
Centisome position: 84.22
GC content: 44.66
Gene sequence:
>1077_bases ATGCCTGGTATAGAAGCATTTAGTCCCAAGGGAATGCTTCATGAAAGTTGGTCTGCTCAAGCTAACGACTACGCAATTGT CTGCGGCTGGGCACTACAAGGTAAAACTTTTTTAGTAGGTGATGTCGCTGGTGGGCTTTATGCATTTGAGGGAATATCTG GAAAGCTCATTTGGCAAATAAAAGACATACATAAAGGTGGCTTACTCGCAATGTCTATACATCCAAATGGAAAGACTTTT GCAACTGCTGGCCAAGATGGACATGTAAATATATGGGAAAGCCAAAAGGGTACGTCAACTAAAACTTTGGAACTTGGGAA AGGATGGGTTGAGCACATCAAGTGGTCCCCAGACGGAAAATTTTTAGCTGTAGTTTTTACTAAATACGTCTATGTTTTTG ATGATAAAGGTCAAGAACATTGGCGATCAGATGAGCATCCCAGCACTGTCAGCGCGATTGCTTGGTCTAATTCAAATGAA TTAGCAACAGCATGCTATGGCCAAGTCACTTTTTTTGATGTAGTAAACGACAAGATCAATCAAAAGTTGGAATGGCGAGG CTCGCTAGTATCGATGGTGCTTAGTCCAGATGGAGACATAGTGGCATGCGGCAGCCAAGATAATTCTGTTCATTTCTGGC GTCGTTCAACTGATCAAGATTCAGAGATGACAGGCTACCCAGGTAAACCAAGCCACCTAGCTTTTGATCAAACCGGCACA GTCCTTGCTACTGGGGGTAGTGATCGCGTGACGGTTTGGAGTTTTCAAGGCGATGGTCCTGAGGGAACTGTACCAGGAGA GTTAATGCTTCATACGGAACCCATTTCATGTCTTGCTTTTTCACACAGCGGGATGCTTCTTTTAGCTTCTGGCGCGAGAG ATGGTTCAGTTTTTTCTTGGTTTCTCCAAAAAGATGGTCAGGGTGATCCAGTTGGTGGTGCATTTGCCGGTGACCTTGTA AGCCAAATCGCTTGGCACCCTGATGACACTGCTTTGGCTGCAATAAATGCAAACGGAGGAATTACGGTTTGGGAGTTTAA GGTTCGGACGAAAACGTCAGCTCAAGGATTCGGATAA
Upstream 100 bases:
>100_bases CACAACCTGATAAAGAATGGGGCAATGAACCTCGCCGTAACCAACTCGTCTTTATCGGTAGAAATCTTGATGAAGCAGAA ATGATCAAGGAGTTTGATAA
Downstream 100 bases:
>100_bases GGTCAAAATTTCTTATTTCCAATAGATTCTCGAGAGCTACTCGATTGCTATTAGCTAGAAAATTAAAAACCCAACAAGGG GAGTTTTTACTGATGTATAA
Product: WD-40 repeat-containing G-protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 358; Mature: 357
Protein sequence:
>358_residues MPGIEAFSPKGMLHESWSAQANDYAIVCGWALQGKTFLVGDVAGGLYAFEGISGKLIWQIKDIHKGGLLAMSIHPNGKTF ATAGQDGHVNIWESQKGTSTKTLELGKGWVEHIKWSPDGKFLAVVFTKYVYVFDDKGQEHWRSDEHPSTVSAIAWSNSNE LATACYGQVTFFDVVNDKINQKLEWRGSLVSMVLSPDGDIVACGSQDNSVHFWRRSTDQDSEMTGYPGKPSHLAFDQTGT VLATGGSDRVTVWSFQGDGPEGTVPGELMLHTEPISCLAFSHSGMLLLASGARDGSVFSWFLQKDGQGDPVGGAFAGDLV SQIAWHPDDTALAAINANGGITVWEFKVRTKTSAQGFG
Sequences:
>Translated_358_residues MPGIEAFSPKGMLHESWSAQANDYAIVCGWALQGKTFLVGDVAGGLYAFEGISGKLIWQIKDIHKGGLLAMSIHPNGKTF ATAGQDGHVNIWESQKGTSTKTLELGKGWVEHIKWSPDGKFLAVVFTKYVYVFDDKGQEHWRSDEHPSTVSAIAWSNSNE LATACYGQVTFFDVVNDKINQKLEWRGSLVSMVLSPDGDIVACGSQDNSVHFWRRSTDQDSEMTGYPGKPSHLAFDQTGT VLATGGSDRVTVWSFQGDGPEGTVPGELMLHTEPISCLAFSHSGMLLLASGARDGSVFSWFLQKDGQGDPVGGAFAGDLV SQIAWHPDDTALAAINANGGITVWEFKVRTKTSAQGFG >Mature_357_residues PGIEAFSPKGMLHESWSAQANDYAIVCGWALQGKTFLVGDVAGGLYAFEGISGKLIWQIKDIHKGGLLAMSIHPNGKTFA TAGQDGHVNIWESQKGTSTKTLELGKGWVEHIKWSPDGKFLAVVFTKYVYVFDDKGQEHWRSDEHPSTVSAIAWSNSNEL ATACYGQVTFFDVVNDKINQKLEWRGSLVSMVLSPDGDIVACGSQDNSVHFWRRSTDQDSEMTGYPGKPSHLAFDQTGTV LATGGSDRVTVWSFQGDGPEGTVPGELMLHTEPISCLAFSHSGMLLLASGARDGSVFSWFLQKDGQGDPVGGAFAGDLVS QIAWHPDDTALAAINANGGITVWEFKVRTKTSAQGFG
Specific function: May play a regulatory role during the complex growth cycle and in secondary metabolite production [H]
COG id: COG2319
COG function: function code R; FOG: WD40 repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 7 WD repeats [H]
Homologues:
Organism=Homo sapiens, GI113865883, Length=271, Percent_Identity=27.3062730627306, Blast_Score=65, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71982263, Length=311, Percent_Identity=26.0450160771704, Blast_Score=74, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020472 - InterPro: IPR011009 - InterPro: IPR000719 - InterPro: IPR017441 - InterPro: IPR017442 - InterPro: IPR008271 - InterPro: IPR015943 - InterPro: IPR001680 - InterPro: IPR011046 - InterPro: IPR019782 - InterPro: IPR019775 - InterPro: IPR017986 - InterPro: IPR019781 [H]
Pfam domain/function: PF00069 Pkinase; PF00400 WD40 [H]
EC number: =2.7.11.1 [H]
Molecular weight: Translated: 38623; Mature: 38492
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: PS00678 WD_REPEATS_1 ; PS50082 WD_REPEATS_2 ; PS50294 WD_REPEATS_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGIEAFSPKGMLHESWSAQANDYAIVCGWALQGKTFLVGDVAGGLYAFEGISGKLIWQI CCCCCCCCCCCCEECCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEECCCCCEEEEEE KDIHKGGLLAMSIHPNGKTFATAGQDGHVNIWESQKGTSTKTLELGKGWVEHIKWSPDGK EECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCEEEECCCCHHHHEEECCCCC FLAVVFTKYVYVFDDKGQEHWRSDEHPSTVSAIAWSNSNELATACYGQVTFFDVVNDKIN EEEEEEEEEEEEEECCCHHHCCCCCCCCEEEEEEECCCCCEEEEEECCEEEEEEHHHHHC QKLEWRGSLVSMVLSPDGDIVACGSQDNSVHFWRRSTDQDSEMTGYPGKPSHLAFDQTGT CEEEECCCEEEEEECCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCE VLATGGSDRVTVWSFQGDGPEGTVPGELMLHTEPISCLAFSHSGMLLLASGARDGSVFSW EEEECCCCEEEEEEEECCCCCCCCCCEEEEEECCCEEEEECCCCEEEEECCCCCCCEEEE FLQKDGQGDPVGGAFAGDLVSQIAWHPDDTALAAINANGGITVWEFKVRTKTSAQGFG EEECCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEEECCCCCCCC >Mature Secondary Structure PGIEAFSPKGMLHESWSAQANDYAIVCGWALQGKTFLVGDVAGGLYAFEGISGKLIWQI CCCCCCCCCCCEECCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEECCCCCEEEEEE KDIHKGGLLAMSIHPNGKTFATAGQDGHVNIWESQKGTSTKTLELGKGWVEHIKWSPDGK EECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCEEEECCCCHHHHEEECCCCC FLAVVFTKYVYVFDDKGQEHWRSDEHPSTVSAIAWSNSNELATACYGQVTFFDVVNDKIN EEEEEEEEEEEEEECCCHHHCCCCCCCCEEEEEEECCCCCEEEEEECCEEEEEEHHHHHC QKLEWRGSLVSMVLSPDGDIVACGSQDNSVHFWRRSTDQDSEMTGYPGKPSHLAFDQTGT CEEEECCCEEEEEECCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCE VLATGGSDRVTVWSFQGDGPEGTVPGELMLHTEPISCLAFSHSGMLLLASGARDGSVFSW EEEECCCCEEEEEEEECCCCCCCCCCEEEEEECCCEEEEECCCCEEEEECCCCCCCEEEE FLQKDGQGDPVGGAFAGDLVSQIAWHPDDTALAAINANGGITVWEFKVRTKTSAQGFG EEECCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8631732 [H]