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The map label for this gene is atpD

Identifier: 124026543

GI number: 124026543

Start: 1500122

End: 1501588

Strand: Direct

Name: atpD

Synonym: NATL1_18381

Alternate gene names: 124026543

Gene position: 1500122-1501588 (Clockwise)

Preceding gene: 124026540

Following gene: 124026544

Centisome position: 80.45

GC content: 42.47

Gene sequence:

>1467_bases
ATGGCCGCTTCTGCTACCGCTACTGTTGGAACTAAGGGTATTGTTCGCCAAGTAATTGGTCCTGTTTTAGATGTTGAATT
CCCAGCTGGCAAGCTGCCTTCAATTCTTAATGCATTAAGGATTGAAGGCAAAAATCCTGCTGGGCAAGATGTTGCACTGA
CTGCTGAAGTTCAACAATTATTAGGTGATCATCGGGTTAGAGCCGTCGCTATGAGCGGAACTGATGGATTAGTTAGAGGT
ATGGAAGCTTTAGACACAGGAGCTCCAATTTCTGTACCTGTTGGTGAAGCCACCCTTGGAAGAATTTTCAACGTCCTTGG
GGAACCTGTAGATGAGCAAGGCGACCTTAAGAATGTAACTACCTCTCCAATACACCGATCAGCCCCAAGCCTTACAGATT
TAGAAACAAAACCAAAAGTATTTGAGACTGGTATCAAAGTTATCGATTTGCTGGCTCCATACCGTCAGGGTGGAAAAGTT
GGATTATTTGGTGGGGCTGGAGTAGGTAAAACAGTTCTAATTCAAGAGCTCATAAACAATATTGCAAAAGAGCATGGTGG
CGTATCAGTTTTTGGTGGAGTGGGAGAAAGAACTAGAGAAGGTAACGATTTATATGAAGAATTTAAAGAGTCTGGTGTGA
TTAATTCTGAAGATCTAACCAAGTCAAAAGTAGCTTTGTGCTTTGGTCAAATGAATGAGCCCCCAGGCGCAAGAATGAGG
GTGGGCCTATCTGCCTTGACTATGGCTGAGCATTTCCGTGATGTAAATAAGCAAGATGTTCTTCTGTTCATCGATAATAT
CTTCAGATTTGTTCAGGCTGGATCAGAAGTATCTGCTTTGCTAGGGCGTATGCCATCTGCTGTTGGATATCAGCCAACCT
TAGGAACTGACGTGGGAGAGCTTCAAGAAAGGATTACCTCTACCCTTGAAGGATCTATTACCTCAATTCAGGCTGTTTAT
GTACCTGCTGACGACTTAACGGACCCTGCACCTGCTACTACTTTTGCTCACTTAGATGCAACTACAGTTTTAGCAAGAGC
TCTTGCAGCCAAGGGAATTTATCCTGCCGTTGATCCACTTGACTCAACCAGCACAATGTTACAGCCGTCTGTTGTAGGAG
ATGAGCATTACCGCACGGCCAGAGCTGTTCAATCAACACTTCAGAGATATAAGGAATTGCAGGATATTATTGCGATTTTG
GGATTGGACGAACTATCAGAAGAGGATAGGAAGACAGTTGATCGTGCCCGCAAAATTGAGAAATTCTTATCTCAACCATT
CTTTGTTGCTGAAATATTTACAGGTATGTCAGGTAAATACGTCAAATTAGAAGATACGATTAAAGGTTTCAATATGATTC
TTTCAGGTGAACTTGACCAACTCCCTGAGCAAGCTTTCTATCTTGTTGGAAGCATTGATGAAGTGAAAGCTAAAGCAGAA
AAATTAGCATCTGAAGCAAAAGCTTAA

Upstream 100 bases:

>100_bases
GTTGACCGAACACTAAAAAAAAATGCCTGTGGAGTGGTAGTCTAAGCCGCTGATAAGGGTATGCAAATCAGAGCATGCTC
ACAAAGTTTCTAGTTATCTT

Downstream 100 bases:

>100_bases
ATTAATTTGTTTTGTTTAATTACCTCAACACAACGTTTTTTAAATTCCTCAAGAAATGACTCTTACTCTACGAGTTCTTG
CTCCTGATCAGAGCGTATTT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 488; Mature: 487

Protein sequence:

>488_residues
MAASATATVGTKGIVRQVIGPVLDVEFPAGKLPSILNALRIEGKNPAGQDVALTAEVQQLLGDHRVRAVAMSGTDGLVRG
MEALDTGAPISVPVGEATLGRIFNVLGEPVDEQGDLKNVTTSPIHRSAPSLTDLETKPKVFETGIKVIDLLAPYRQGGKV
GLFGGAGVGKTVLIQELINNIAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINSEDLTKSKVALCFGQMNEPPGARMR
VGLSALTMAEHFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGELQERITSTLEGSITSIQAVY
VPADDLTDPAPATTFAHLDATTVLARALAAKGIYPAVDPLDSTSTMLQPSVVGDEHYRTARAVQSTLQRYKELQDIIAIL
GLDELSEEDRKTVDRARKIEKFLSQPFFVAEIFTGMSGKYVKLEDTIKGFNMILSGELDQLPEQAFYLVGSIDEVKAKAE
KLASEAKA

Sequences:

>Translated_488_residues
MAASATATVGTKGIVRQVIGPVLDVEFPAGKLPSILNALRIEGKNPAGQDVALTAEVQQLLGDHRVRAVAMSGTDGLVRG
MEALDTGAPISVPVGEATLGRIFNVLGEPVDEQGDLKNVTTSPIHRSAPSLTDLETKPKVFETGIKVIDLLAPYRQGGKV
GLFGGAGVGKTVLIQELINNIAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINSEDLTKSKVALCFGQMNEPPGARMR
VGLSALTMAEHFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGELQERITSTLEGSITSIQAVY
VPADDLTDPAPATTFAHLDATTVLARALAAKGIYPAVDPLDSTSTMLQPSVVGDEHYRTARAVQSTLQRYKELQDIIAIL
GLDELSEEDRKTVDRARKIEKFLSQPFFVAEIFTGMSGKYVKLEDTIKGFNMILSGELDQLPEQAFYLVGSIDEVKAKAE
KLASEAKA
>Mature_487_residues
AASATATVGTKGIVRQVIGPVLDVEFPAGKLPSILNALRIEGKNPAGQDVALTAEVQQLLGDHRVRAVAMSGTDGLVRGM
EALDTGAPISVPVGEATLGRIFNVLGEPVDEQGDLKNVTTSPIHRSAPSLTDLETKPKVFETGIKVIDLLAPYRQGGKVG
LFGGAGVGKTVLIQELINNIAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINSEDLTKSKVALCFGQMNEPPGARMRV
GLSALTMAEHFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGELQERITSTLEGSITSIQAVYV
PADDLTDPAPATTFAHLDATTVLARALAAKGIYPAVDPLDSTSTMLQPSVVGDEHYRTARAVQSTLQRYKELQDIIAILG
LDELSEEDRKTVDRARKIEKFLSQPFFVAEIFTGMSGKYVKLEDTIKGFNMILSGELDQLPEQAFYLVGSIDEVKAKAEK
LASEAKA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=473, Percent_Identity=68.2875264270613, Blast_Score=647, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=330, Percent_Identity=28.4848484848485, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI19913426, Length=395, Percent_Identity=25.5696202531646, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI19913428, Length=368, Percent_Identity=25, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI50345984, Length=401, Percent_Identity=24.9376558603491, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI4757810, Length=401, Percent_Identity=24.9376558603491, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI1790170, Length=470, Percent_Identity=64.8936170212766, Blast_Score=602, Evalue=1e-173,
Organism=Escherichia coli, GI1788251, Length=387, Percent_Identity=29.4573643410853, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1790172, Length=459, Percent_Identity=23.7472766884532, Blast_Score=96, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI25144756, Length=485, Percent_Identity=65.360824742268, Blast_Score=627, Evalue=1e-180,
Organism=Caenorhabditis elegans, GI17565854, Length=302, Percent_Identity=28.8079470198675, Blast_Score=106, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17510931, Length=398, Percent_Identity=25.3768844221106, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17570191, Length=440, Percent_Identity=24.5454545454545, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71988080, Length=377, Percent_Identity=23.8726790450928, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71988063, Length=377, Percent_Identity=23.8726790450928, Blast_Score=84, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6322581, Length=473, Percent_Identity=67.23044397463, Blast_Score=635, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=443, Percent_Identity=26.1851015801354, Blast_Score=106, Evalue=8e-24,
Organism=Saccharomyces cerevisiae, GI6319370, Length=393, Percent_Identity=24.9363867684478, Blast_Score=81, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6320016, Length=254, Percent_Identity=25.9842519685039, Blast_Score=71, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24638766, Length=475, Percent_Identity=66.7368421052632, Blast_Score=634, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=475, Percent_Identity=67.1578947368421, Blast_Score=624, Evalue=1e-179,
Organism=Drosophila melanogaster, GI20129479, Length=446, Percent_Identity=26.6816143497758, Blast_Score=115, Evalue=6e-26,
Organism=Drosophila melanogaster, GI24583992, Length=326, Percent_Identity=29.1411042944785, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24583988, Length=304, Percent_Identity=29.6052631578947, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24583986, Length=304, Percent_Identity=29.6052631578947, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24583984, Length=304, Percent_Identity=29.6052631578947, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI281361666, Length=418, Percent_Identity=26.0765550239234, Blast_Score=105, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24646341, Length=418, Percent_Identity=26.0765550239234, Blast_Score=105, Evalue=1e-22,
Organism=Drosophila melanogaster, GI17136796, Length=418, Percent_Identity=26.0765550239234, Blast_Score=105, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24638768, Length=97, Percent_Identity=51.5463917525773, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24658560, Length=400, Percent_Identity=23.5, Blast_Score=76, Evalue=4e-14,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_PROM1 (A2C4I4)

Other databases:

- EMBL:   CP000553
- RefSeq:   YP_001015658.1
- ProteinModelPortal:   A2C4I4
- SMR:   A2C4I4
- STRING:   A2C4I4
- GeneID:   4780646
- GenomeReviews:   CP000553_GR
- KEGG:   pme:NATL1_18381
- eggNOG:   COG0055
- HOGENOM:   HBG565875
- OMA:   HYKTARA
- ProtClustDB:   PRK09280
- BioCyc:   PMAR167555:NATL1_18381-MONOMER
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 52209; Mature: 52078

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAASATATVGTKGIVRQVIGPVLDVEFPAGKLPSILNALRIEGKNPAGQDVALTAEVQQL
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEHHHHHHH
LGDHRVRAVAMSGTDGLVRGMEALDTGAPISVPVGEATLGRIFNVLGEPVDEQGDLKNVT
HCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
TSPIHRSAPSLTDLETKPKVFETGIKVIDLLAPYRQGGKVGLFGGAGVGKTVLIQELINN
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
IAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINSEDLTKSKVALCFGQMNEPPGARMR
HHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHH
VGLSALTMAEHFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGE
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHH
LQERITSTLEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLARALAAKGIYPAVDPL
HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
DSTSTMLQPSVVGDEHYRTARAVQSTLQRYKELQDIIAILGLDELSEEDRKTVDRARKIE
CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHH
KFLSQPFFVAEIFTGMSGKYVKLEDTIKGFNMILSGELDQLPEQAFYLVGSIDEVKAKAE
HHHCCCHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCHHHCCHHHHHHHCCHHHHHHHHH
KLASEAKA
HHHHHCCC
>Mature Secondary Structure 
AASATATVGTKGIVRQVIGPVLDVEFPAGKLPSILNALRIEGKNPAGQDVALTAEVQQL
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEHHHHHHH
LGDHRVRAVAMSGTDGLVRGMEALDTGAPISVPVGEATLGRIFNVLGEPVDEQGDLKNVT
HCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
TSPIHRSAPSLTDLETKPKVFETGIKVIDLLAPYRQGGKVGLFGGAGVGKTVLIQELINN
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
IAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINSEDLTKSKVALCFGQMNEPPGARMR
HHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHH
VGLSALTMAEHFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGE
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHH
LQERITSTLEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLARALAAKGIYPAVDPL
HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
DSTSTMLQPSVVGDEHYRTARAVQSTLQRYKELQDIIAILGLDELSEEDRKTVDRARKIE
CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHH
KFLSQPFFVAEIFTGMSGKYVKLEDTIKGFNMILSGELDQLPEQAFYLVGSIDEVKAKAE
HHHCCCHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCHHHCCHHHHHHHCCHHHHHHHHH
KLASEAKA
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA