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The map label for this gene is kaiC [H]

Identifier: 124026474

GI number: 124026474

Start: 1451777

End: 1453279

Strand: Reverse

Name: kaiC [H]

Synonym: NATL1_17691

Alternate gene names: 124026474

Gene position: 1453279-1451777 (Counterclockwise)

Preceding gene: 124026475

Following gene: 124026471

Centisome position: 77.94

GC content: 36.06

Gene sequence:

>1503_bases
ATGCATGTTCAAAAACTCCCCACTGGAATCGAGGGCTTTGATGATATTTGTCATGGTGGATTGCCTAATGCGCGAAGCAC
TCTAGTCAGCGGAACATCAGGTACTGGTAAAACTGTTTTCTCTCTGCAATATCTTCATCATGGAATATGTAATTTTGATG
AGCCTGGGATTTTTGTTACTTTTGAAGAATCGCCATTAGATATTATTCGAAATGCTGCAAGTTTTGGTTGGGATTTACAA
GGGTTAATTGATCAAAATAAGCTTTTTATTTTAGATGCATCTCCAGATCCAGATGGACAAGATGTGGCTGGAAGTTTTGA
TTTATCTGGGTTGATTGAAAGGATAAGTTATGCGATTAGAAAGTTCAAAGCTAAGAGAGTAGCTATAGATTCAATGACAG
CAGTTTTCCAACAATATGACGCTATTTATGTTGTTAGAAGAGAGATTTTTCGACTAATAGCAAGACTTAAAGAAATAGGT
GTGACTACTGTTATGACCACTGAAAGAATAGATGAATATGGTCCAATTGCTAGATATGGAGTAGAAGAATTCGTTTCTGA
TAATGTTGTTATTCTGAGAAATGTTCTAGAGGCAGAGAAGAGGAGAAGAACTGTAGAAATTTTGAAATTAAGAGGAACTA
CACATATGAAGGGTGAATTCCCTTTTACTATGGGTTCCCATGGAATAGTTGCATTCCCTTTGGGTGCAATGAGGTTGACT
CAAAGATCATCCAATATTCGAATAAGTTCTGGTGTTCCCGCTTTGGATGAAATGTGTGGAGGAGGATATTTTCAAGATTC
AATTATTCTTGCAACTGGTGCAACTGGTACCGGAAAAACAATGCTAGTTTCAAAGTTTGTTGAAGATGCATACTTAAATA
ATGAAAGAACAATCCTTTTTGCGTATGAAGAATCAAGAGCACAACTTCTTCGAAATGCAACTAGCTGGGGGATTGATTTT
GAAAAAATGGAAGCTGATGGATTATTGAAGATTATTTGTGCTTATCCTGAATCAACTGGATTGGAAGATCATCTGCAAAT
TATTAAAACTGAAATTAGCGAATATAAACCATCCAGAATGGCTATAGATTCTCTATCCGCATTGGCTAGAGGTGTCAGCT
TAAATGCATTTAGACAGTTTGTTATTGGAGTAACTGGTTATGCAAAACAAGAAGAAATAGCAGGATTCTTTACTAATACT
GCAGAAGAATTCATGGGAAGCCATTCAATTACTGATTCCCATATTTCAACGATAACTGATACTATTTTGCTTTTGCAATA
TGTAGAAATAAGAGGTGAAATGGCAAGAGCAATAAATGTTTTTAAGATGCGCGGATCTTGGCATGACAAAAGGATACGCG
AATATATCATTACTAATGAAGGACCTGAGATTAAGGATTCATTCTCTAACTTTGAACAGATATTTAGTGGTGCCCCTCAT
CGAATTAATCCTGAAGAACAGATACCTGGCGTTTTTAAAAGCATTAATCCAAAAGAACGGTAA

Upstream 100 bases:

>100_bases
TCTTAAGCCCAACCGATAACTAAGCTGTTTTTACAGTTTGTTCATTATGTTTTGTACATAAGAGCATTTAGCGTTCTTCA
ATACAAAAAATCGACCCAAA

Downstream 100 bases:

>100_bases
CTAGTAACTCTATTTAATTAATGTCTTATCATTTTCAAGTTCCCAATTTTTCCTAGCAGATTTTAGTAACAACTCATCAG
CGTCAGAGTCTTCAAGAGGA

Product: circadian clock protein KaiC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 500; Mature: 500

Protein sequence:

>500_residues
MHVQKLPTGIEGFDDICHGGLPNARSTLVSGTSGTGKTVFSLQYLHHGICNFDEPGIFVTFEESPLDIIRNAASFGWDLQ
GLIDQNKLFILDASPDPDGQDVAGSFDLSGLIERISYAIRKFKAKRVAIDSMTAVFQQYDAIYVVRREIFRLIARLKEIG
VTTVMTTERIDEYGPIARYGVEEFVSDNVVILRNVLEAEKRRRTVEILKLRGTTHMKGEFPFTMGSHGIVAFPLGAMRLT
QRSSNIRISSGVPALDEMCGGGYFQDSIILATGATGTGKTMLVSKFVEDAYLNNERTILFAYEESRAQLLRNATSWGIDF
EKMEADGLLKIICAYPESTGLEDHLQIIKTEISEYKPSRMAIDSLSALARGVSLNAFRQFVIGVTGYAKQEEIAGFFTNT
AEEFMGSHSITDSHISTITDTILLLQYVEIRGEMARAINVFKMRGSWHDKRIREYIITNEGPEIKDSFSNFEQIFSGAPH
RINPEEQIPGVFKSINPKER

Sequences:

>Translated_500_residues
MHVQKLPTGIEGFDDICHGGLPNARSTLVSGTSGTGKTVFSLQYLHHGICNFDEPGIFVTFEESPLDIIRNAASFGWDLQ
GLIDQNKLFILDASPDPDGQDVAGSFDLSGLIERISYAIRKFKAKRVAIDSMTAVFQQYDAIYVVRREIFRLIARLKEIG
VTTVMTTERIDEYGPIARYGVEEFVSDNVVILRNVLEAEKRRRTVEILKLRGTTHMKGEFPFTMGSHGIVAFPLGAMRLT
QRSSNIRISSGVPALDEMCGGGYFQDSIILATGATGTGKTMLVSKFVEDAYLNNERTILFAYEESRAQLLRNATSWGIDF
EKMEADGLLKIICAYPESTGLEDHLQIIKTEISEYKPSRMAIDSLSALARGVSLNAFRQFVIGVTGYAKQEEIAGFFTNT
AEEFMGSHSITDSHISTITDTILLLQYVEIRGEMARAINVFKMRGSWHDKRIREYIITNEGPEIKDSFSNFEQIFSGAPH
RINPEEQIPGVFKSINPKER
>Mature_500_residues
MHVQKLPTGIEGFDDICHGGLPNARSTLVSGTSGTGKTVFSLQYLHHGICNFDEPGIFVTFEESPLDIIRNAASFGWDLQ
GLIDQNKLFILDASPDPDGQDVAGSFDLSGLIERISYAIRKFKAKRVAIDSMTAVFQQYDAIYVVRREIFRLIARLKEIG
VTTVMTTERIDEYGPIARYGVEEFVSDNVVILRNVLEAEKRRRTVEILKLRGTTHMKGEFPFTMGSHGIVAFPLGAMRLT
QRSSNIRISSGVPALDEMCGGGYFQDSIILATGATGTGKTMLVSKFVEDAYLNNERTILFAYEESRAQLLRNATSWGIDF
EKMEADGLLKIICAYPESTGLEDHLQIIKTEISEYKPSRMAIDSLSALARGVSLNAFRQFVIGVTGYAKQEEIAGFFTNT
AEEFMGSHSITDSHISTITDTILLLQYVEIRGEMARAINVFKMRGSWHDKRIREYIITNEGPEIKDSFSNFEQIFSGAPH
RINPEEQIPGVFKSINPKER

Specific function: Core component of the kaiBC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The kaiBC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014774
- InterPro:   IPR013503
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: =2.7.11.1 [H]

Molecular weight: Translated: 55834; Mature: 55834

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS51146 KAIC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHVQKLPTGIEGFDDICHGGLPNARSTLVSGTSGTGKTVFSLQYLHHGICNFDEPGIFVT
CCCCCCCCCCCCHHHHHCCCCCCCHHHEEECCCCCCCHHEEHHHHHCCCCCCCCCCEEEE
FEESPLDIIRNAASFGWDLQGLIDQNKLFILDASPDPDGQDVAGSFDLSGLIERISYAIR
ECCCHHHHHHHHHHCCCCHHHEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
KFKAKRVAIDSMTAVFQQYDAIYVVRREIFRLIARLKEIGVTTVMTTERIDEYGPIARYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCHHHHH
VEEFVSDNVVILRNVLEAEKRRRTVEILKLRGTTHMKGEFPFTMGSHGIVAFPLGAMRLT
HHHHHCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEECCCCCEEEECCCHHHHH
QRSSNIRISSGVPALDEMCGGGYFQDSIILATGATGTGKTMLVSKFVEDAYLNNERTILF
HCCCCEEEECCCCHHHHHHCCCEECCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE
AYEESRAQLLRNATSWGIDFEKMEADGLLKIICAYPESTGLEDHLQIIKTEISEYKPSRM
EECHHHHHHHHHHHHCCCCHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHH
AIDSLSALARGVSLNAFRQFVIGVTGYAKQEEIAGFFTNTAEEFMGSHSITDSHISTITD
HHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
TILLLQYVEIRGEMARAINVFKMRGSWHDKRIREYIITNEGPEIKDSFSNFEQIFSGAPH
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
RINPEEQIPGVFKSINPKER
CCCCHHHCCHHHHCCCCCCC
>Mature Secondary Structure
MHVQKLPTGIEGFDDICHGGLPNARSTLVSGTSGTGKTVFSLQYLHHGICNFDEPGIFVT
CCCCCCCCCCCCHHHHHCCCCCCCHHHEEECCCCCCCHHEEHHHHHCCCCCCCCCCEEEE
FEESPLDIIRNAASFGWDLQGLIDQNKLFILDASPDPDGQDVAGSFDLSGLIERISYAIR
ECCCHHHHHHHHHHCCCCHHHEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
KFKAKRVAIDSMTAVFQQYDAIYVVRREIFRLIARLKEIGVTTVMTTERIDEYGPIARYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCHHHHH
VEEFVSDNVVILRNVLEAEKRRRTVEILKLRGTTHMKGEFPFTMGSHGIVAFPLGAMRLT
HHHHHCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEECCCCCEEEECCCHHHHH
QRSSNIRISSGVPALDEMCGGGYFQDSIILATGATGTGKTMLVSKFVEDAYLNNERTILF
HCCCCEEEECCCCHHHHHHCCCEECCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE
AYEESRAQLLRNATSWGIDFEKMEADGLLKIICAYPESTGLEDHLQIIKTEISEYKPSRM
EECHHHHHHHHHHHHCCCCHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHH
AIDSLSALARGVSLNAFRQFVIGVTGYAKQEEIAGFFTNTAEEFMGSHSITDSHISTITD
HHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
TILLLQYVEIRGEMARAINVFKMRGSWHDKRIREYIITNEGPEIKDSFSNFEQIFSGAPH
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
RINPEEQIPGVFKSINPKER
CCCCHHHCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12917486 [H]