Click here to switch to the map view.

The map label for this gene is yidC [H]

Identifier: 124026366

GI number: 124026366

Start: 1350907

End: 1352055

Strand: Direct

Name: yidC [H]

Synonym: NATL1_16601

Alternate gene names: 124026366

Gene position: 1350907-1352055 (Clockwise)

Preceding gene: 124026365

Following gene: 124026367

Centisome position: 72.45

GC content: 38.21

Gene sequence:

>1149_bases
GTGATCGGGTACATCTCTGACAATCTACTTATCCCGATCCTAGATTTTTTCTACGGATTAGTTCCAAGCTATGGACTAGC
GATTGTCGCATTAACCATAGTAATCCGCTTAGCACTTTTTCCTCTTAGCGCTGGCTCTATTAGAAGTGCAAGAAGGATGA
AAATAGCTCAACCTGTCATGCAAAAAAGACAAGCTGAGATCAAAAGCCGCTATGCAAGCAATCCTCAAAAGCAACAAGAA
GAATTAGGAAAATTAATGGGTGAATTTGGAAGTCCCTTAGCTGGTTGCCTTCCTCTGATTGTTCAAATGCCAATATTATT
CGCATTATTCGCAACTCTAAGAGGATCACCTTTTGCTGATGTACCTTATCTTGTGAATATCAAAGTTCTTCCATCAGACC
AAATAGCCGCTGTAGAGCCCAAACCTTTCAAGACCGCAAAACACTCCATATTTATAACTGAAAAGAATCATTTCCCTGTT
ATCGCAGCTCTTCCGGGTGGTACAAAAATCGGTTCAGGTGATTCAGTTAAAATCAGTCTGCAAACCATGAATGGAGATTC
ATATGTAAACGAATTGCAGAAATATGAAAATGGATCGAAATTTTCTCCTTCTTGGAAAGTCACGAAAGGGGAAGATATCG
TAAAAGTCTCTTCTGATGGAACTGTGAATGCACTTAATCCTGGAGATGCGACCGTAGAAGCGAAGATCCCTGGTTTAGCA
GCGAAAAGCGGATTCTTGTTTATAAAAGCATTAGGAAATGTTGGTTTTTATGTAGATGGCGCCATTCATTGGGATATTGC
AATTTTAGTAGCAGGTTTTGGTTTAACACTCGTTATTTCTCAAGTGCTCTCTGGAAGAGGAATGCCAGTAAATAAACAAC
AATCAACAGCGAATAAAATCACACCGGTAATGATTACTGGAATGTTTTTATTCTTCCCTTTGCCTGCTGGTGTTTTGCTT
TATATGGTCATTGCAAATATTTTTCAAGGGTTACAAACATTTCTCCTCAGCAGAGAATCCCTACCAGATAATTTGCAAAA
AATACTTGATGATCAACTAAACCAACAAGATAAATCAACTGTTTCTGTTGCTTCAGAAGTAATTTCTGATTCCGATAGAT
TACCCTTTGAACCTAAAAGTAATAAATAA

Upstream 100 bases:

>100_bases
AGGCTTTTCAAACTAATGAGCCCTCACAAACATGTGAGACAAGAACACATCTTCTAAGGCAAACTGGCCTAACAACCTTA
AACTTTCTACCTTAAAAACC

Downstream 100 bases:

>100_bases
TTATAAAAGCAACTTATTATATAAATTCAGCCTCATAGAGAATCAAATCAATAACTGATGTCTAATTGGGACGAACAACT
TGATCTACTAATTCGAGCTA

Product: putative inner membrane protein translocase component YidC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MIGYISDNLLIPILDFFYGLVPSYGLAIVALTIVIRLALFPLSAGSIRSARRMKIAQPVMQKRQAEIKSRYASNPQKQQE
ELGKLMGEFGSPLAGCLPLIVQMPILFALFATLRGSPFADVPYLVNIKVLPSDQIAAVEPKPFKTAKHSIFITEKNHFPV
IAALPGGTKIGSGDSVKISLQTMNGDSYVNELQKYENGSKFSPSWKVTKGEDIVKVSSDGTVNALNPGDATVEAKIPGLA
AKSGFLFIKALGNVGFYVDGAIHWDIAILVAGFGLTLVISQVLSGRGMPVNKQQSTANKITPVMITGMFLFFPLPAGVLL
YMVIANIFQGLQTFLLSRESLPDNLQKILDDQLNQQDKSTVSVASEVISDSDRLPFEPKSNK

Sequences:

>Translated_382_residues
MIGYISDNLLIPILDFFYGLVPSYGLAIVALTIVIRLALFPLSAGSIRSARRMKIAQPVMQKRQAEIKSRYASNPQKQQE
ELGKLMGEFGSPLAGCLPLIVQMPILFALFATLRGSPFADVPYLVNIKVLPSDQIAAVEPKPFKTAKHSIFITEKNHFPV
IAALPGGTKIGSGDSVKISLQTMNGDSYVNELQKYENGSKFSPSWKVTKGEDIVKVSSDGTVNALNPGDATVEAKIPGLA
AKSGFLFIKALGNVGFYVDGAIHWDIAILVAGFGLTLVISQVLSGRGMPVNKQQSTANKITPVMITGMFLFFPLPAGVLL
YMVIANIFQGLQTFLLSRESLPDNLQKILDDQLNQQDKSTVSVASEVISDSDRLPFEPKSNK
>Mature_382_residues
MIGYISDNLLIPILDFFYGLVPSYGLAIVALTIVIRLALFPLSAGSIRSARRMKIAQPVMQKRQAEIKSRYASNPQKQQE
ELGKLMGEFGSPLAGCLPLIVQMPILFALFATLRGSPFADVPYLVNIKVLPSDQIAAVEPKPFKTAKHSIFITEKNHFPV
IAALPGGTKIGSGDSVKISLQTMNGDSYVNELQKYENGSKFSPSWKVTKGEDIVKVSSDGTVNALNPGDATVEAKIPGLA
AKSGFLFIKALGNVGFYVDGAIHWDIAILVAGFGLTLVISQVLSGRGMPVNKQQSTANKITPVMITGMFLFFPLPAGVLL
YMVIANIFQGLQTFLLSRESLPDNLQKILDDQLNQQDKSTVSVASEVISDSDRLPFEPKSNK

Specific function: Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and indepe

COG id: COG0706

COG function: function code U; Preprotein translocase subunit YidC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OXA1/oxaA family. Type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790140, Length=117, Percent_Identity=31.6239316239316, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001708 [H]

Pfam domain/function: PF02096 60KD_IMP [H]

EC number: NA

Molecular weight: Translated: 41390; Mature: 41390

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGYISDNLLIPILDFFYGLVPSYGLAIVALTIVIRLALFPLSAGSIRSARRMKIAQPVM
CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
QKRQAEIKSRYASNPQKQQEELGKLMGEFGSPLAGCLPLIVQMPILFALFATLRGSPFAD
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VPYLVNIKVLPSDQIAAVEPKPFKTAKHSIFITEKNHFPVIAALPGGTKIGSGDSVKISL
CCEEEEEEEECCCCEEECCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCEEEEEE
QTMNGDSYVNELQKYENGSKFSPSWKVTKGEDIVKVSSDGTVNALNPGDATVEAKIPGLA
EECCCHHHHHHHHHHCCCCCCCCCEEEECCCCEEEECCCCCEEECCCCCCEEEEECCCCC
AKSGFLFIKALGNVGFYVDGAIHWDIAILVAGFGLTLVISQVLSGRGMPVNKQQSTANKI
CCCCEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCC
TPVMITGMFLFFPLPAGVLLYMVIANIFQGLQTFLLSRESLPDNLQKILDDQLNQQDKST
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHH
VSVASEVISDSDRLPFEPKSNK
HHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MIGYISDNLLIPILDFFYGLVPSYGLAIVALTIVIRLALFPLSAGSIRSARRMKIAQPVM
CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
QKRQAEIKSRYASNPQKQQEELGKLMGEFGSPLAGCLPLIVQMPILFALFATLRGSPFAD
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VPYLVNIKVLPSDQIAAVEPKPFKTAKHSIFITEKNHFPVIAALPGGTKIGSGDSVKISL
CCEEEEEEEECCCCEEECCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCEEEEEE
QTMNGDSYVNELQKYENGSKFSPSWKVTKGEDIVKVSSDGTVNALNPGDATVEAKIPGLA
EECCCHHHHHHHHHHCCCCCCCCCEEEECCCCEEEECCCCCEEECCCCCCEEEEECCCCC
AKSGFLFIKALGNVGFYVDGAIHWDIAILVAGFGLTLVISQVLSGRGMPVNKQQSTANKI
CCCCEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCC
TPVMITGMFLFFPLPAGVLLYMVIANIFQGLQTFLLSRESLPDNLQKILDDQLNQQDKST
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHH
VSVASEVISDSDRLPFEPKSNK
HHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12917486 [H]