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The map label for this gene is rnpA

Identifier: 124026364

GI number: 124026364

Start: 1350029

End: 1350415

Strand: Direct

Name: rnpA

Synonym: NATL1_16581

Alternate gene names: 124026364

Gene position: 1350029-1350415 (Clockwise)

Preceding gene: 124026363

Following gene: 124026365

Centisome position: 72.4

GC content: 35.66

Gene sequence:

>387_bases
ATGGTTTTGCCAAAACATATGAGACTCAAAGGTCATAGATGTTTTGACTTCATCTATAAAGAGGGTTCAAGGTTCTACAG
CTCCTCAATGGTTCTTAGAGTTACAGACGCAAATAAAAAGCCTCAAGTCAAAGGGAAACAATCAAAAACGAGGCCCTCTA
TAAAATGTGCCATATCCATAAGCAATAAAGTAAGCAAAAAATCAGTTACAAGAAATAAGCTTCGACGGTTATTCCACCAT
CATTTGTCATTAAGACTTTCTAATATGTCGTGTGATAAAGAGATTTGGGCTTTTATTTCTTTAAAACCCTCTTCCATGAA
AAATTCCTACAGCACTTTGCTTAAGGAGTGTGACAAACTACTCACTAAGGCTGGAATAACAAAATGA

Upstream 100 bases:

>100_bases
AAGGAGAGTTGTAAGAACACGTAGAAAACGTGGAAGATCACGTTTAACTGTCTAAAAGAAAGCTCTCAAATAAAGATACT
TACAACAAAAGTTTCTTCTA

Downstream 100 bases:

>100_bases
CAATTAGTCCCAACGAAGACATTTTTTACGAAGGTGGTCCTGCCAGCAGCGACCTAATAATAAATTTAATGGCTGGGATA
ACACTTATTGGTCTCCCTTT

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MVLPKHMRLKGHRCFDFIYKEGSRFYSSSMVLRVTDANKKPQVKGKQSKTRPSIKCAISISNKVSKKSVTRNKLRRLFHH
HLSLRLSNMSCDKEIWAFISLKPSSMKNSYSTLLKECDKLLTKAGITK

Sequences:

>Translated_128_residues
MVLPKHMRLKGHRCFDFIYKEGSRFYSSSMVLRVTDANKKPQVKGKQSKTRPSIKCAISISNKVSKKSVTRNKLRRLFHH
HLSLRLSNMSCDKEIWAFISLKPSSMKNSYSTLLKECDKLLTKAGITK
>Mature_128_residues
MVLPKHMRLKGHRCFDFIYKEGSRFYSSSMVLRVTDANKKPQVKGKQSKTRPSIKCAISISNKVSKKSVTRNKLRRLFHH
HLSLRLSNMSCDKEIWAFISLKPSSMKNSYSTLLKECDKLLTKAGITK

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_PROM1 (A2C405)

Other databases:

- EMBL:   CP000553
- RefSeq:   YP_001015480.1
- STRING:   A2C405
- GeneID:   4779405
- GenomeReviews:   CP000553_GR
- KEGG:   pme:NATL1_16581
- HOGENOM:   HBG728160
- OMA:   MRLKGHR
- ProtClustDB:   CLSK919642
- BioCyc:   PMAR167555:NATL1_16581-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- Gene3D:   G3DSA:3.30.230.10
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 14761; Mature: 14761

Theoretical pI: Translated: 11.15; Mature: 11.15

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLPKHMRLKGHRCFDFIYKEGSRFYSSSMVLRVTDANKKPQVKGKQSKTRPSIKCAISI
CCCCCCCCCCCCHHHHHHHHHCCCEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEE
SNKVSKKSVTRNKLRRLFHHHLSLRLSNMSCDKEIWAFISLKPSSMKNSYSTLLKECDKL
CCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHEEEEEECCHHHHHHHHHHHHHHHHH
LTKAGITK
HHHCCCCC
>Mature Secondary Structure
MVLPKHMRLKGHRCFDFIYKEGSRFYSSSMVLRVTDANKKPQVKGKQSKTRPSIKCAISI
CCCCCCCCCCCCHHHHHHHHHCCCEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEE
SNKVSKKSVTRNKLRRLFHHHLSLRLSNMSCDKEIWAFISLKPSSMKNSYSTLLKECDKL
CCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHEEEEEECCHHHHHHHHHHHHHHHHH
LTKAGITK
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA