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The map label for this gene is ycf4

Identifier: 124026312

GI number: 124026312

Start: 1313113

End: 1313688

Strand: Reverse

Name: ycf4

Synonym: NATL1_16061

Alternate gene names: 124026312

Gene position: 1313688-1313113 (Counterclockwise)

Preceding gene: 124026315

Following gene: 124026311

Centisome position: 70.45

GC content: 36.11

Gene sequence:

>576_bases
ATGTCATCTGAATCAAAGTCAAGCCAATCAGAAAAAGAGCTATCTGGTTTGGTTTTAGAACAGAAAATTAAAGGTTCGCG
TAAGGTTTCGAACTATCTTGTTGCTTCGATGCTAAGTATCGGAGGTGTTGGATTTTTATTGGCTTCATTCTCTAGTTATT
TTGGAAGAGATTTTTTACCACTAGGAAACCCTTCGACCCTGATTTTTGTTCCTCAGGGCCTGGTTATGGGGCTATACGGT
TTAGCGGCTTTCTTGCTGGCTATTTATTTTTGGAGACTAATAAATATTGATTATGGTTCTGGCGTAAATAGATTTGATAA
AAATAAAGGAGTTTTATCTTTATCTCGGAGAGGTTTATTCAAAAATATAGAAATAGAAATCCCCATTGATGAGATTAAAG
CTGTGAAATTAGAGGTAAGAGAGGGTTTTAATCCACTAAGAAGAGTATCTTTGAGGATTAAAGGTAGGAAGGATTTACCT
ATATCTCGAGTTGGATCTCCTAAGCCATTATTGGATTTAGAGAATGAGGGGGCTGAAATTGCGAGATTTTTAGAGGTTAA
CCTTGAAGGGATTTAA

Upstream 100 bases:

>100_bases
ATGAGATAAAATCAATTTTTTTTATTTCTACTTATTAATTGTCAAAAACTTAGTCTCTATAATGTTTTGAAAGGGATGTG
CTTCCCAATTTCATGAGATT

Downstream 100 bases:

>100_bases
TAATAAAATTACTAATCTTTCAAATAATTCAATTTTATCTTATAGATTTTTTCAACCGGTTTATATTTTTCTATTTGTTA
ATTTGTTTTTGATTTCGGGA

Product: photosystem I assembly protein Ycf4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MSSESKSSQSEKELSGLVLEQKIKGSRKVSNYLVASMLSIGGVGFLLASFSSYFGRDFLPLGNPSTLIFVPQGLVMGLYG
LAAFLLAIYFWRLINIDYGSGVNRFDKNKGVLSLSRRGLFKNIEIEIPIDEIKAVKLEVREGFNPLRRVSLRIKGRKDLP
ISRVGSPKPLLDLENEGAEIARFLEVNLEGI

Sequences:

>Translated_191_residues
MSSESKSSQSEKELSGLVLEQKIKGSRKVSNYLVASMLSIGGVGFLLASFSSYFGRDFLPLGNPSTLIFVPQGLVMGLYG
LAAFLLAIYFWRLINIDYGSGVNRFDKNKGVLSLSRRGLFKNIEIEIPIDEIKAVKLEVREGFNPLRRVSLRIKGRKDLP
ISRVGSPKPLLDLENEGAEIARFLEVNLEGI
>Mature_190_residues
SSESKSSQSEKELSGLVLEQKIKGSRKVSNYLVASMLSIGGVGFLLASFSSYFGRDFLPLGNPSTLIFVPQGLVMGLYGL
AAFLLAIYFWRLINIDYGSGVNRFDKNKGVLSLSRRGLFKNIEIEIPIDEIKAVKLEVREGFNPLRRVSLRIKGRKDLPI
SRVGSPKPLLDLENEGAEIARFLEVNLEGI

Specific function: Seems to be required for the assembly of the photosystem I complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ycf4 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCF4_PROM1 (A2C3V3)

Other databases:

- EMBL:   CP000553
- RefSeq:   YP_001015428.1
- STRING:   A2C3V3
- GeneID:   4780564
- GenomeReviews:   CP000553_GR
- KEGG:   pme:NATL1_16061
- eggNOG:   NOG06447
- HOGENOM:   HBG439339
- OMA:   LTRVGQP
- ProtClustDB:   PRK02542
- BioCyc:   PMAR167555:NATL1_16061-MONOMER
- GO:   GO:0015979
- HAMAP:   MF_00437
- InterPro:   IPR003359
- ProDom:   PD003698

Pfam domain/function: PF02392 Ycf4

EC number: NA

Molecular weight: Translated: 21153; Mature: 21022

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x21a47dd0)-; HASH(0x21405e60)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSESKSSQSEKELSGLVLEQKIKGSRKVSNYLVASMLSIGGVGFLLASFSSYFGRDFLP
CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCC
LGNPSTLIFVPQGLVMGLYGLAAFLLAIYFWRLINIDYGSGVNRFDKNKGVLSLSRRGLF
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHCCCE
KNIEIEIPIDEIKAVKLEVREGFNPLRRVSLRIKGRKDLPISRVGSPKPLLDLENEGAEI
ECCEEEECHHHHHHHHHHHHHCCCHHHHEEEEECCCCCCCCCCCCCCCCCEECCCCHHHH
ARFLEVNLEGI
HHHHHHHCCCH
>Mature Secondary Structure 
SSESKSSQSEKELSGLVLEQKIKGSRKVSNYLVASMLSIGGVGFLLASFSSYFGRDFLP
CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCC
LGNPSTLIFVPQGLVMGLYGLAAFLLAIYFWRLINIDYGSGVNRFDKNKGVLSLSRRGLF
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHCCCE
KNIEIEIPIDEIKAVKLEVREGFNPLRRVSLRIKGRKDLPISRVGSPKPLLDLENEGAEI
ECCEEEECHHHHHHHHHHHHHCCCHHHHEEEEECCCCCCCCCCCCCCCCCEECCCCHHHH
ARFLEVNLEGI
HHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA