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The map label for this gene is pcbF

Identifier: 124026266

GI number: 124026266

Start: 1266447

End: 1267535

Strand: Reverse

Name: pcbF

Synonym: NATL1_15601

Alternate gene names: 124026266

Gene position: 1267535-1266447 (Counterclockwise)

Preceding gene: 124026267

Following gene: 124026264

Centisome position: 67.97

GC content: 41.97

Gene sequence:

>1089_bases
ATGCAGTCCTACGGAAACCCAGACGTCACCTACGGGTGGTGGGTTGGTAATTCTGTCGTAACAAATAAGTCAAGCCGATT
TATTGGCTCGCATGTTGCTCATACAGGATTGATTTGTTTCGCAGCTGGTGCCAACACACTTTGGGAGCTCGCTAGATACA
ACCCAGATATTCCAATGGGACACCAAGGAATGGTGAGCATCCCACACCTTGCTTCTATTGGTATTGGATTTGATCCAACT
GGAACAGTATTCGACGGAACATCAATTGCTTTTATCGGAGTATTCCATCTGATTTGTTCAATGGTTTATGCGGGTGCAGG
TCTATTGCACTCTCTGATTTTTAGCGAAGATACCCAAAATAGTTCAGGTTTGTTTGCTGATGATCGTCCTGAACATCGTC
AGGCAGCAAGATACAAGCTTGAATGGGATAATCCAGATAATCAGACTTTTATTCTTGGTCACCATTTGATTTTCTTTGGT
GTTGCATGTATTTGGTTTGTTGAGTGGGCTCGAATACATGGGATTTACGATCCTGCAATAGGAGCTGTTCGACAAGTCGA
GTACAACTTAAACTTGACCAACATTTGGAATCATCAGTTTGATTTCTTGGCTATTGATAGTCTGGAGGATGTTATGGGTG
GTCATGCATTCTTAGCATTTGTTGAGATCACAGGTGGTGCTTTCCATATCGCTACGAAGCAGACTGGAGAATACACAGAA
TTCAAAGGGAAGAATATTCTTTCTGCTGAAGCAGTTCTTTCCTGGTCTCTTGCTGGTATTGGTTGGATGGCAATTATTGC
TGCTTTCTGGTGTGCAACCAATACAACTGTTTATCCAGAGGCTTGGTACGGAGAAACATTAGCTCTTAAGTTTGGAATCT
CTCCATATTGGATTGATACTGCTGATATGACTGGTGTCGTTAGTGGTCATACTTCAAGAGCTTGGCTTGCGAATGTTCAT
TACTATCTTGGTTTCTTCTTTATTCAAGGACACCTTTGGCATGCAATACGTGCTCTAGGCTTTGATTTCAAAAAGGTTAC
TGATGCAATTAGTAATCTTGATGGAGCAAGAGTTACTCTCACTGATTGA

Upstream 100 bases:

>100_bases
GATTATTTTTGTGCATTAAATAAAGACCTTTTACGATTTCAAGCAAATTTATTGCACTAAATGTAAGGTAGGTCGAATTT
CGACTTCAATTTCCTCAATT

Downstream 100 bases:

>100_bases
TTTTCTGAATCTTTCAGCATTAAAAAAGAGTCTCGTCTTTTGACGAGACTCTTTTTTTATTGAAAAAAATTAAAGAGGTT
TTAACTTTCTTTAGTTTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MQSYGNPDVTYGWWVGNSVVTNKSSRFIGSHVAHTGLICFAAGANTLWELARYNPDIPMGHQGMVSIPHLASIGIGFDPT
GTVFDGTSIAFIGVFHLICSMVYAGAGLLHSLIFSEDTQNSSGLFADDRPEHRQAARYKLEWDNPDNQTFILGHHLIFFG
VACIWFVEWARIHGIYDPAIGAVRQVEYNLNLTNIWNHQFDFLAIDSLEDVMGGHAFLAFVEITGGAFHIATKQTGEYTE
FKGKNILSAEAVLSWSLAGIGWMAIIAAFWCATNTTVYPEAWYGETLALKFGISPYWIDTADMTGVVSGHTSRAWLANVH
YYLGFFFIQGHLWHAIRALGFDFKKVTDAISNLDGARVTLTD

Sequences:

>Translated_362_residues
MQSYGNPDVTYGWWVGNSVVTNKSSRFIGSHVAHTGLICFAAGANTLWELARYNPDIPMGHQGMVSIPHLASIGIGFDPT
GTVFDGTSIAFIGVFHLICSMVYAGAGLLHSLIFSEDTQNSSGLFADDRPEHRQAARYKLEWDNPDNQTFILGHHLIFFG
VACIWFVEWARIHGIYDPAIGAVRQVEYNLNLTNIWNHQFDFLAIDSLEDVMGGHAFLAFVEITGGAFHIATKQTGEYTE
FKGKNILSAEAVLSWSLAGIGWMAIIAAFWCATNTTVYPEAWYGETLALKFGISPYWIDTADMTGVVSGHTSRAWLANVH
YYLGFFFIQGHLWHAIRALGFDFKKVTDAISNLDGARVTLTD
>Mature_362_residues
MQSYGNPDVTYGWWVGNSVVTNKSSRFIGSHVAHTGLICFAAGANTLWELARYNPDIPMGHQGMVSIPHLASIGIGFDPT
GTVFDGTSIAFIGVFHLICSMVYAGAGLLHSLIFSEDTQNSSGLFADDRPEHRQAARYKLEWDNPDNQTFILGHHLIFFG
VACIWFVEWARIHGIYDPAIGAVRQVEYNLNLTNIWNHQFDFLAIDSLEDVMGGHAFLAFVEITGGAFHIATKQTGEYTE
FKGKNILSAEAVLSWSLAGIGWMAIIAAFWCATNTTVYPEAWYGETLALKFGISPYWIDTADMTGVVSGHTSRAWLANVH
YYLGFFFIQGHLWHAIRALGFDFKKVTDAISNLDGARVTLTD

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystems II and I. The Prochlorales pcb genes are not related to the higher plant LHCs

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PCBF_PROMT (Q46JW5)

Other databases:

- EMBL:   CP000095
- RefSeq:   YP_291916.1
- ProteinModelPortal:   Q46JW5
- STRING:   Q46JW5
- GeneID:   3606100
- GenomeReviews:   CP000095_GR
- KEGG:   pmn:PMN2A_0722
- eggNOG:   NOG10575
- HOGENOM:   HBG284351
- OMA:   IFHLICS
- ProtClustDB:   CLSK919712
- BioCyc:   PMAR59920:PMN2A_0722-MONOMER
- InterPro:   IPR000932

Pfam domain/function: PF00421 PSII

EC number: NA

Molecular weight: Translated: 40061; Mature: 40061

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1f30dfd0)-; HASH(0x219b1a30)-; HASH(0x219c9a00)-; HASH(0x219bda98)-; HASH(0x219c634c)-; HASH(0x215df3c0)-;

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSYGNPDVTYGWWVGNSVVTNKSSRFIGSHVAHTGLICFAAGANTLWELARYNPDIPMG
CCCCCCCCCEEEEEECCEEEECCCCHHHHHHHHHHCEEEEECCCHHHHHHHHCCCCCCCC
HQGMVSIPHLASIGIGFDPTGTVFDGTSIAFIGVFHLICSMVYAGAGLLHSLIFSEDTQN
CCCCEECCCHHHCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SSGLFADDRPEHRQAARYKLEWDNPDNQTFILGHHLIFFGVACIWFVEWARIHGIYDPAI
CCCCCCCCCCCHHHHHEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHH
GAVRQVEYNLNLTNIWNHQFDFLAIDSLEDVMGGHAFLAFVEITGGAFHIATKQTGEYTE
HHEEEEEEECCEEEECCCCCCEEEECCHHHHHCCCEEEEEEEECCCEEEEEECCCCCCCC
FKGKNILSAEAVLSWSLAGIGWMAIIAAFWCATNTTVYPEAWYGETLALKFGISPYWIDT
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEECCCEEEEEC
ADMTGVVSGHTSRAWLANVHYYLGFFFIQGHLWHAIRALGFDFKKVTDAISNLDGARVTL
CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEE
TD
CH
>Mature Secondary Structure
MQSYGNPDVTYGWWVGNSVVTNKSSRFIGSHVAHTGLICFAAGANTLWELARYNPDIPMG
CCCCCCCCCEEEEEECCEEEECCCCHHHHHHHHHHCEEEEECCCHHHHHHHHCCCCCCCC
HQGMVSIPHLASIGIGFDPTGTVFDGTSIAFIGVFHLICSMVYAGAGLLHSLIFSEDTQN
CCCCEECCCHHHCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SSGLFADDRPEHRQAARYKLEWDNPDNQTFILGHHLIFFGVACIWFVEWARIHGIYDPAI
CCCCCCCCCCCHHHHHEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHH
GAVRQVEYNLNLTNIWNHQFDFLAIDSLEDVMGGHAFLAFVEITGGAFHIATKQTGEYTE
HHEEEEEEECCEEEECCCCCCEEEECCHHHHHCCCEEEEEEEECCCEEEEEECCCCCCCC
FKGKNILSAEAVLSWSLAGIGWMAIIAAFWCATNTTVYPEAWYGETLALKFGISPYWIDT
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEECCCEEEEEC
ADMTGVVSGHTSRAWLANVHYYLGFFFIQGHLWHAIRALGFDFKKVTDAISNLDGARVTL
CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEE
TD
CH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA