Click here to switch to the map view.

The map label for this gene is cytM [H]

Identifier: 124026235

GI number: 124026235

Start: 1244523

End: 1244912

Strand: Direct

Name: cytM [H]

Synonym: NATL1_15291

Alternate gene names: 124026235

Gene position: 1244523-1244912 (Clockwise)

Preceding gene: 124026233

Following gene: 124026236

Centisome position: 66.74

GC content: 35.9

Gene sequence:

>390_bases
GTGAATATTCCGTCATCAAAAGCATTAATTAAGGAGAACCAAGAAATCAGCTCTTGGAGAATATTTTTATTAACATCTGT
CACTCTAATCCTATTAATTCTTTTTTGGAGAATGGGGGATTTAAAGCAAGATCCTTTCATAACTGAAACTTTATCTCTTC
AAGGTGAATCTTTGTCAGGAAGTAAATTATTCAAAATCAATTGTGTCGGTTGCCATGGGATCTCAGCTCAAGGTTTTGTA
GGGCCCGACCTACATGAAGCGACTCAAGAAATGAGTGATAAAAAGATTATTAATCAAGTTATTCGAGGATTGACTCCACC
AATGCCAAGTTTTGAAATCGAACCTCAATCAATGGCTGATCTGCTGGAGTATATGCATTCACTCAATTAA

Upstream 100 bases:

>100_bases
GGGAACTAGTCCAAGAACAATCCCACATAGCAGAGGCTCAATCATTGGCTCGTACTTTTATGATTAATAATGACAATTCT
TTCATGTCAAAGAGGTTTTA

Downstream 100 bases:

>100_bases
AAGTGGCTATAAATAAAACTCTAAAAGTAATACTTGTCGAGCCAGCGGGGCCAATCAATGTTGGGAGTGTTGCAAGACTC
TGTGAAAACTTTAGTGTTCA

Product: cytochrome cM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MNIPSSKALIKENQEISSWRIFLLTSVTLILLILFWRMGDLKQDPFITETLSLQGESLSGSKLFKINCVGCHGISAQGFV
GPDLHEATQEMSDKKIINQVIRGLTPPMPSFEIEPQSMADLLEYMHSLN

Sequences:

>Translated_129_residues
MNIPSSKALIKENQEISSWRIFLLTSVTLILLILFWRMGDLKQDPFITETLSLQGESLSGSKLFKINCVGCHGISAQGFV
GPDLHEATQEMSDKKIINQVIRGLTPPMPSFEIEPQSMADLLEYMHSLN
>Mature_129_residues
MNIPSSKALIKENQEISSWRIFLLTSVTLILLILFWRMGDLKQDPFITETLSLQGESLSGSKLFKINCVGCHGISAQGFV
GPDLHEATQEMSDKKIINQVIRGLTPPMPSFEIEPQSMADLLEYMHSLN

Specific function: Unknown

COG id: COG2010

COG function: function code C; Cytochrome c, mono- and diheme variants

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 14450; Mature: 14450

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIPSSKALIKENQEISSWRIFLLTSVTLILLILFWRMGDLKQDPFITETLSLQGESLSG
CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCC
SKLFKINCVGCHGISAQGFVGPDLHEATQEMSDKKIINQVIRGLTPPMPSFEIEPQSMAD
CEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
LLEYMHSLN
HHHHHHHCC
>Mature Secondary Structure
MNIPSSKALIKENQEISSWRIFLLTSVTLILLILFWRMGDLKQDPFITETLSLQGESLSG
CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCC
SKLFKINCVGCHGISAQGFVGPDLHEATQEMSDKKIINQVIRGLTPPMPSFEIEPQSMAD
CEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
LLEYMHSLN
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]