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The map label for this gene is cad [H]

Identifier: 124026203

GI number: 124026203

Start: 1208516

End: 1209910

Strand: Reverse

Name: cad [H]

Synonym: NATL1_14971

Alternate gene names: 124026203

Gene position: 1209910-1208516 (Counterclockwise)

Preceding gene: 124026207

Following gene: 124026202

Centisome position: 64.88

GC content: 37.28

Gene sequence:

>1395_bases
ATGGGGCTTTTAAACTTGCTTTCTGCTAATAGAAGCGAAAATCTTTTTTTACCTGCACATGGAAGAGGAAATGCTCTCCC
AGAAAAAATAAAAACTCTATTGAGGCTTAGACCAGGTATTTGGGATTTGCCTGAGCTTTTTGAGATTGGCGGTCCGTTGA
TTAGTGAAGGAGCTATAGCAGAAAGTCAAAAGTCTTCTGCCTATGAAGTGGGTGTTGATAGATGTTGGTATGGAGTTAAC
GGAGCGACAGGTTTACTCCAAAGTTCATTGCTTGCTCTAGCTCGTCCTGGGCAAGCTGTTCTCATGCCAAGAAATATACA
TAAAAGTTGTATTCAAGCATGCCTCTTTGGCGGCTTAACACCATTACTTTTCGATGTCCCTTATCTAACTGATAGAGGCC
ATGCCTCTGTTTTGGATAGGAAATGGCTTCAGAGGGTTTTAAAAAAAGCAAAAGACTATGAAGATGATATAGCTGCGGTA
GTTTTAGTTAACCCTACATACCAAGGATATTCTGCAGATATGGAATCTCTAATTAAAGAGATTCATTCTCATTCTTTGCC
AGTTTTGGTTGATGAAGCTCATGGAGCTTACTTAATCAGTCAAATAAGACCGGATTTACCTAGGTCAGCTATATCTTTTG
GTGCAGATCTTGTTGTTCACTCTCTACATAAATCTGCATCAGGTTTAGTTCAATCCGCGGTTTTATGGTCGCAAGGTGAC
AAGGTTGATCCATTTAAAATTGAAAGAACTATTGAGTTGCTTCAAACTTCAAGCCCAAGCTCTCTCTTGTTAGCTTCTTG
TGAAAGTTCAATAAAGGAACTTCTTGAATCTAAAGGGATAAAGAAACTAAGATCATGTATAGAAGAAGCTGAGATGTTAA
AAGATTTTTTGATTAAAAATGAAGTTCCTCTACTCAAAAACAGCGATCCACTAAAAATAATTCTTCACACGTCAAAATTT
GGTTTGAGTGGTATTGAAGTTGATAAAAGCTTTATAAAAAAAAGAATGATTGGCGAATTGGCTGAGCCAGGAACGCTAAC
TTTTTGTCTTGGGCTCTCATCTCACAAGAGATTAGGAAAAAGATTTGTAAGAATTTGGAATGAAATCCTTAAAGCCTATG
GCAAACAAAAACCTTGTTTTTTTAAAAGACCACCTTTCGATATCGTATCTAAGCCATACAAGTCATATTCTGACTCTTGG
GGATCGAATTTTGAAAAGGTGAATCTAAAAGATGCTATTGGAAGAATTTCTGTTGAGATGGTTTGCCCTTATCCTCCTGG
AATACCTTTATTGATTCCTGGTGAGATTTTGGACGAAGCTCGTGTTGATTGGTTGATAGAGCAAAAAAGCTTTTGGCCTG
AACAAATTTCTGATTTTGTAAGAGTTATTTCTTGA

Upstream 100 bases:

>100_bases
GAATTCATCATAAGTTCTTTCAGCTAAACATCTAAGAAGATCTTTTGATTTGCTTACTGATTAATTTAACTACATTGATT
TTAGGTAAATCTTTTATTCC

Downstream 100 bases:

>100_bases
TTAATAATATCTATTCATCAGCTATAATAAAATTTATTATTAATGATCCATTTAAAGTATGTTTTATAAACGAAAGCTAT
ATTTTTTTACCTGATTTAAT

Product: Orn/Lys/Arg decarboxylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MGLLNLLSANRSENLFLPAHGRGNALPEKIKTLLRLRPGIWDLPELFEIGGPLISEGAIAESQKSSAYEVGVDRCWYGVN
GATGLLQSSLLALARPGQAVLMPRNIHKSCIQACLFGGLTPLLFDVPYLTDRGHASVLDRKWLQRVLKKAKDYEDDIAAV
VLVNPTYQGYSADMESLIKEIHSHSLPVLVDEAHGAYLISQIRPDLPRSAISFGADLVVHSLHKSASGLVQSAVLWSQGD
KVDPFKIERTIELLQTSSPSSLLLASCESSIKELLESKGIKKLRSCIEEAEMLKDFLIKNEVPLLKNSDPLKIILHTSKF
GLSGIEVDKSFIKKRMIGELAEPGTLTFCLGLSSHKRLGKRFVRIWNEILKAYGKQKPCFFKRPPFDIVSKPYKSYSDSW
GSNFEKVNLKDAIGRISVEMVCPYPPGIPLLIPGEILDEARVDWLIEQKSFWPEQISDFVRVIS

Sequences:

>Translated_464_residues
MGLLNLLSANRSENLFLPAHGRGNALPEKIKTLLRLRPGIWDLPELFEIGGPLISEGAIAESQKSSAYEVGVDRCWYGVN
GATGLLQSSLLALARPGQAVLMPRNIHKSCIQACLFGGLTPLLFDVPYLTDRGHASVLDRKWLQRVLKKAKDYEDDIAAV
VLVNPTYQGYSADMESLIKEIHSHSLPVLVDEAHGAYLISQIRPDLPRSAISFGADLVVHSLHKSASGLVQSAVLWSQGD
KVDPFKIERTIELLQTSSPSSLLLASCESSIKELLESKGIKKLRSCIEEAEMLKDFLIKNEVPLLKNSDPLKIILHTSKF
GLSGIEVDKSFIKKRMIGELAEPGTLTFCLGLSSHKRLGKRFVRIWNEILKAYGKQKPCFFKRPPFDIVSKPYKSYSDSW
GSNFEKVNLKDAIGRISVEMVCPYPPGIPLLIPGEILDEARVDWLIEQKSFWPEQISDFVRVIS
>Mature_463_residues
GLLNLLSANRSENLFLPAHGRGNALPEKIKTLLRLRPGIWDLPELFEIGGPLISEGAIAESQKSSAYEVGVDRCWYGVNG
ATGLLQSSLLALARPGQAVLMPRNIHKSCIQACLFGGLTPLLFDVPYLTDRGHASVLDRKWLQRVLKKAKDYEDDIAAVV
LVNPTYQGYSADMESLIKEIHSHSLPVLVDEAHGAYLISQIRPDLPRSAISFGADLVVHSLHKSASGLVQSAVLWSQGDK
VDPFKIERTIELLQTSSPSSLLLASCESSIKELLESKGIKKLRSCIEEAEMLKDFLIKNEVPLLKNSDPLKIILHTSKFG
LSGIEVDKSFIKKRMIGELAEPGTLTFCLGLSSHKRLGKRFVRIWNEILKAYGKQKPCFFKRPPFDIVSKPYKSYSDSWG
SNFEKVNLKDAIGRISVEMVCPYPPGIPLLIPGEILDEARVDWLIEQKSFWPEQISDFVRVIS

Specific function: Catalyzes the formation of agmatine from arginine [H]

COG id: COG1982

COG function: function code E; Arginine/lysine/ornithine decarboxylases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-I family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000310
- InterPro:   IPR008286
- InterPro:   IPR015424
- InterPro:   IPR015421 [H]

Pfam domain/function: PF01276 OKR_DC_1; PF03711 OKR_DC_1_C [H]

EC number: =4.1.1.19 [H]

Molecular weight: Translated: 51585; Mature: 51453

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLLNLLSANRSENLFLPAHGRGNALPEKIKTLLRLRPGIWDLPELFEIGGPLISEGAIA
CCCHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHHHCCCCHHCCCCCC
ESQKSSAYEVGVDRCWYGVNGATGLLQSSLLALARPGQAVLMPRNIHKSCIQACLFGGLT
CCCCCCHHHHCHHHHCCCCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCCH
PLLFDVPYLTDRGHASVLDRKWLQRVLKKAKDYEDDIAAVVLVNPTYQGYSADMESLIKE
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHH
IHSHSLPVLVDEAHGAYLISQIRPDLPRSAISFGADLVVHSLHKSASGLVQSAVLWSQGD
HHCCCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KVDPFKIERTIELLQTSSPSSLLLASCESSIKELLESKGIKKLRSCIEEAEMLKDFLIKN
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC
EVPLLKNSDPLKIILHTSKFGLSGIEVDKSFIKKRMIGELAEPGTLTFCLGLSSHKRLGK
CCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH
RFVRIWNEILKAYGKQKPCFFKRPPFDIVSKPYKSYSDSWGSNFEKVNLKDAIGRISVEM
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHCHHHCCCCCEEEHHHHHCCEEEEE
VCPYPPGIPLLIPGEILDEARVDWLIEQKSFWPEQISDFVRVIS
ECCCCCCCCEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
>Mature Secondary Structure 
GLLNLLSANRSENLFLPAHGRGNALPEKIKTLLRLRPGIWDLPELFEIGGPLISEGAIA
CCHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHHHCCCCHHCCCCCC
ESQKSSAYEVGVDRCWYGVNGATGLLQSSLLALARPGQAVLMPRNIHKSCIQACLFGGLT
CCCCCCHHHHCHHHHCCCCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCCH
PLLFDVPYLTDRGHASVLDRKWLQRVLKKAKDYEDDIAAVVLVNPTYQGYSADMESLIKE
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHH
IHSHSLPVLVDEAHGAYLISQIRPDLPRSAISFGADLVVHSLHKSASGLVQSAVLWSQGD
HHCCCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KVDPFKIERTIELLQTSSPSSLLLASCESSIKELLESKGIKKLRSCIEEAEMLKDFLIKN
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC
EVPLLKNSDPLKIILHTSKFGLSGIEVDKSFIKKRMIGELAEPGTLTFCLGLSSHKRLGK
CCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH
RFVRIWNEILKAYGKQKPCFFKRPPFDIVSKPYKSYSDSWGSNFEKVNLKDAIGRISVEM
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHCHHHCCCCCEEEHHHHHCCEEEEE
VCPYPPGIPLLIPGEILDEARVDWLIEQKSFWPEQISDFVRVIS
ECCCCCCCCEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969500; 9384377; 1697575; 1936936 [H]