| Definition | Prochlorococcus marinus str. NATL1A, complete genome. |
|---|---|
| Accession | NC_008819 |
| Length | 1,864,731 |
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The map label for this gene is ligA [H]
Identifier: 124025816
GI number: 124025816
Start: 1008411
End: 1009013
Strand: Reverse
Name: ligA [H]
Synonym: NATL1_11091
Alternate gene names: 124025816
Gene position: 1009013-1008411 (Counterclockwise)
Preceding gene: 124025821
Following gene: 124025815
Centisome position: 54.11
GC content: 36.98
Gene sequence:
>603_bases ATGAGATTACTTGGACTTGATAAGGATTGCTTCTCTAGCTGGTGGGCAAAATTACCAGAGGGATCAACCATGGTTGTGCA GCCTAAAATCGATGGGTGTGCAATAGGACTTAGATATAAATATGGACAATTAGTAGATGCCTATACTCGTGACGATAGTG AGATTATTGAAAACATTAGGAATATTAATTCTATTCCTTTGAGTATTGATGACTCTCTAAAAGTTGAAGTTGAGTTGGAG GGCGTTTTATATTCACCTTTTTCTAATTCAAAGATCTCGATAGAGCAATTGCTTTCGAACTCATTCTCGAAAATTGACAA TAGTACCTCAATTTTATTTAAAGCATTCCAAATTTTTTGCTCTAAAAGTGATGAGTTGTCAGATTTGACCCAACTTCAAA ACTGGGGATTCGAGGTCCCTATAACTCTAAGAACGGATGATCCTAGGCAAGTCAAAAGATGGCATTCTCAATGGATCAAG AATGAATTGTTTTCAAATCTTCCTACCAATGGAATCGTCGCCAAATGCAATTCCTCTTTGACTAAGAATTTTTTGGGCGC TAGTCCTTCATCTCCAAATTGGGCGTTGGCTTTAACTAGATAA
Upstream 100 bases:
>100_bases TTTTTTGTTGATTTGTGAGCACCTCTTTTTGTTTCACTGATTTCTTAAGAAAAGAAGTTATTGAAGCGACTTGGCTCGAC ATCTTCCTATTGATATATAT
Downstream 100 bases:
>100_bases ATTTCTGATTATTTATTTTGATAGTAGATTTGAACATGTTGTTGCTTTTTTACTAGTCTCTATTTAATTATCGTTATTTA GATTGCTAAATAAGCTCAAT
Product: hypothetical protein
Products: NA
Alternate protein names: Polydeoxyribonucleotide synthase [NAD+] [H]
Number of amino acids: Translated: 200; Mature: 200
Protein sequence:
>200_residues MRLLGLDKDCFSSWWAKLPEGSTMVVQPKIDGCAIGLRYKYGQLVDAYTRDDSEIIENIRNINSIPLSIDDSLKVEVELE GVLYSPFSNSKISIEQLLSNSFSKIDNSTSILFKAFQIFCSKSDELSDLTQLQNWGFEVPITLRTDDPRQVKRWHSQWIK NELFSNLPTNGIVAKCNSSLTKNFLGASPSSPNWALALTR
Sequences:
>Translated_200_residues MRLLGLDKDCFSSWWAKLPEGSTMVVQPKIDGCAIGLRYKYGQLVDAYTRDDSEIIENIRNINSIPLSIDDSLKVEVELE GVLYSPFSNSKISIEQLLSNSFSKIDNSTSILFKAFQIFCSKSDELSDLTQLQNWGFEVPITLRTDDPRQVKRWHSQWIK NELFSNLPTNGIVAKCNSSLTKNFLGASPSSPNWALALTR >Mature_200_residues MRLLGLDKDCFSSWWAKLPEGSTMVVQPKIDGCAIGLRYKYGQLVDAYTRDDSEIIENIRNINSIPLSIDDSLKVEVELE GVLYSPFSNSKISIEQLLSNSFSKIDNSTSILFKAFQIFCSKSDELSDLTQLQNWGFEVPITLRTDDPRQVKRWHSQWIK NELFSNLPTNGIVAKCNSSLTKNFLGASPSSPNWALALTR
Specific function: DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of dam
COG id: COG0272
COG function: function code L; NAD-dependent DNA ligase (contains BRCT domain type II)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 BRCT domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001357 - InterPro: IPR018239 - InterPro: IPR004150 - InterPro: IPR001679 - InterPro: IPR013839 - InterPro: IPR013840 - InterPro: IPR003583 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR010994 - InterPro: IPR004149 [H]
Pfam domain/function: PF00533 BRCT; PF01653 DNA_ligase_aden; PF03120 DNA_ligase_OB; PF03119 DNA_ligase_ZBD [H]
EC number: =6.5.1.2 [H]
Molecular weight: Translated: 22572; Mature: 22572
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLGLDKDCFSSWWAKLPEGSTMVVQPKIDGCAIGLRYKYGQLVDAYTRDDSEIIENIR CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEECCCHHHHHHCCCHHHHHHHHH NINSIPLSIDDSLKVEVELEGVLYSPFSNSKISIEQLLSNSFSKIDNSTSILFKAFQIFC CCCCCCEEECCCEEEEEEEEEEEECCCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHH SKSDELSDLTQLQNWGFEVPITLRTDDPRQVKRWHSQWIKNELFSNLPTNGIVAKCNSSL CCCCCHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHH TKNFLGASPSSPNWALALTR HHHHCCCCCCCCCEEEEECC >Mature Secondary Structure MRLLGLDKDCFSSWWAKLPEGSTMVVQPKIDGCAIGLRYKYGQLVDAYTRDDSEIIENIR CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEECCCHHHHHHCCCHHHHHHHHH NINSIPLSIDDSLKVEVELEGVLYSPFSNSKISIEQLLSNSFSKIDNSTSILFKAFQIFC CCCCCCEEECCCEEEEEEEEEEEECCCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHH SKSDELSDLTQLQNWGFEVPITLRTDDPRQVKRWHSQWIKNELFSNLPTNGIVAKCNSSL CCCCCHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHH TKNFLGASPSSPNWALALTR HHHHCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7569993; 8253680 [H]