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The map label for this gene is 124025789

Identifier: 124025789

GI number: 124025789

Start: 992775

End: 993992

Strand: Reverse

Name: 124025789

Synonym: NATL1_10821

Alternate gene names: NA

Gene position: 993992-992775 (Counterclockwise)

Preceding gene: 124025790

Following gene: 124025788

Centisome position: 53.3

GC content: 37.36

Gene sequence:

>1218_bases
TTGAAAAAAAGTTTGTTTACTAGATTCGAGAGGGTCAATACCGAAACTAATAATAGGACTTTTCTTCCTTCTGGTCTTAA
TGGGAAAGCATTAGATATTTCACTGGATGATATTCCCTCTAGAAAAGAAGTTAGAGATACGATACCCAAGCATTGTTTTA
CTCGCCAAACTAAAAGATCTCTTTTTTATCTCTCTAGGACAGTAGTTATTCAGATCTTTGTTGTTTTGATAGGTCTCTCT
ATCCCTCTTACCAAGGGGATGATTCCAATTTGGATTTTATATGCAATTCTTTCTGGGACAACTTCAATGGGGCTATGGGT
TTTAGCTCATGAATGTGGACATGGTGCATTTTCTGATAATCGTAAACTTGAAACACTTGTCGGATATTGTCTTCATTCTT
TTTTACTAGTTCCATACTTTTCGTGGCAAAGATCACATGCTGTTCACCATGCTTTTACCAATCACATAACCGATGGAGAG
ACACATGTTCCTGTTGTGATCTCAGGAGATGGTAAATCCGAAAAAAAAGGTGGAGAGAATGAAATGGAGTCTTCGTTGTT
TTTTGGCAAAATTCTATATGGATTTAATCAACTATTTCTTCACTTGATTCTGGGATGGCCAGCTTACTTACTACTTGGCA
AAACAGGCGGACCTAGATATGGGACCAGTAATCATTTCTGGCCAACAGCTCCCTTCTCGAAAAAACTTTGGCCATCCATA
TGGGCTAAAAAAGTATGGATCTCCGACTGGGGAATTGGTTTTATGCTCCTTTTATTGCTCCTTTGGTCTATAAATTTTGG
GCTTAATTCTATGATTAGTCTATATTTAGGTCCTCTTATTGTTGTTAATATCTGGCTAGTTATTTATACATGGCTCCACC
ATACAGATACTGATGTTCCCCATCTAGGTGCTAGTCAATTCTCCTATATGAGAGGAGCCTTCTTATCTATAGATAGACCC
TATGGAAGGATATTTGATTTTCTTCATCACTCAATAGGTTCTACTCACGTCATTCATCATATTGAACCCACAGTTCCTCA
CTATCATGCAAGACTTGCAACGAGAATATTGAAAAATAAATTTCCTAAAGTATACCTATACAATCCCACCCCAATTCACA
AGTCTCTTTGGCACATAGCCACTAATTGTGTTGCAGTGAAAAAGGATTATGCTATCGATAGATATGTTTGGAAACAACCC
GACTATTCACAGTCTTAA

Upstream 100 bases:

>100_bases
ACTTTTATAAACTATTTTTTGTGAAAGTTAGAAATTCCTATAGCCTCATAGCACTCTTGCAGAGTAACGTCGTATATGAT
CCGTAATCATGTTCTAAAAA

Downstream 100 bases:

>100_bases
TTATCACTGTGATATCTTTAATATTATTTTCTACAAATTATTTTTATTTCTCTAAATTCACTAGATAAAATATTTATATA
ATTTATTTTATAAAATTTAA

Product: Fatty acid desaturase

Products: NA

Alternate protein names: Delta(12)-Fatty Acid Dehydrogenase; Omega-3 Fatty Acid Desaturase; Fatty Acid Desaturase Domain Protein; Omega-3 Acyl-Lipid Desaturase; Omega 3 Acyl-Lipid Desaturase

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MKKSLFTRFERVNTETNNRTFLPSGLNGKALDISLDDIPSRKEVRDTIPKHCFTRQTKRSLFYLSRTVVIQIFVVLIGLS
IPLTKGMIPIWILYAILSGTTSMGLWVLAHECGHGAFSDNRKLETLVGYCLHSFLLVPYFSWQRSHAVHHAFTNHITDGE
THVPVVISGDGKSEKKGGENEMESSLFFGKILYGFNQLFLHLILGWPAYLLLGKTGGPRYGTSNHFWPTAPFSKKLWPSI
WAKKVWISDWGIGFMLLLLLLWSINFGLNSMISLYLGPLIVVNIWLVIYTWLHHTDTDVPHLGASQFSYMRGAFLSIDRP
YGRIFDFLHHSIGSTHVIHHIEPTVPHYHARLATRILKNKFPKVYLYNPTPIHKSLWHIATNCVAVKKDYAIDRYVWKQP
DYSQS

Sequences:

>Translated_405_residues
MKKSLFTRFERVNTETNNRTFLPSGLNGKALDISLDDIPSRKEVRDTIPKHCFTRQTKRSLFYLSRTVVIQIFVVLIGLS
IPLTKGMIPIWILYAILSGTTSMGLWVLAHECGHGAFSDNRKLETLVGYCLHSFLLVPYFSWQRSHAVHHAFTNHITDGE
THVPVVISGDGKSEKKGGENEMESSLFFGKILYGFNQLFLHLILGWPAYLLLGKTGGPRYGTSNHFWPTAPFSKKLWPSI
WAKKVWISDWGIGFMLLLLLLWSINFGLNSMISLYLGPLIVVNIWLVIYTWLHHTDTDVPHLGASQFSYMRGAFLSIDRP
YGRIFDFLHHSIGSTHVIHHIEPTVPHYHARLATRILKNKFPKVYLYNPTPIHKSLWHIATNCVAVKKDYAIDRYVWKQP
DYSQS
>Mature_405_residues
MKKSLFTRFERVNTETNNRTFLPSGLNGKALDISLDDIPSRKEVRDTIPKHCFTRQTKRSLFYLSRTVVIQIFVVLIGLS
IPLTKGMIPIWILYAILSGTTSMGLWVLAHECGHGAFSDNRKLETLVGYCLHSFLLVPYFSWQRSHAVHHAFTNHITDGE
THVPVVISGDGKSEKKGGENEMESSLFFGKILYGFNQLFLHLILGWPAYLLLGKTGGPRYGTSNHFWPTAPFSKKLWPSI
WAKKVWISDWGIGFMLLLLLLWSINFGLNSMISLYLGPLIVVNIWLVIYTWLHHTDTDVPHLGASQFSYMRGAFLSIDRP
YGRIFDFLHHSIGSTHVIHHIEPTVPHYHARLATRILKNKFPKVYLYNPTPIHKSLWHIATNCVAVKKDYAIDRYVWKQP
DYSQS

Specific function: Unknown

COG id: COG3239

COG function: function code I; Fatty acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI71999459, Length=349, Percent_Identity=29.7994269340974, Blast_Score=134, Evalue=6e-32,
Organism=Caenorhabditis elegans, GI17542730, Length=345, Percent_Identity=29.2753623188406, Blast_Score=127, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46435; Mature: 46435

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSLFTRFERVNTETNNRTFLPSGLNGKALDISLDDIPSRKEVRDTIPKHCFTRQTKRS
CCHHHHHHHHHHCCCCCCCEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
LFYLSRTVVIQIFVVLIGLSIPLTKGMIPIWILYAILSGTTSMGLWVLAHECGHGAFSDN
HHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHCCCHHHHHEEEHHCCCCCCCCC
RKLETLVGYCLHSFLLVPYFSWQRSHAVHHAFTNHITDGETHVPVVISGDGKSEKKGGEN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHH
EMESSLFFGKILYGFNQLFLHLILGWPAYLLLGKTGGPRYGTSNHFWPTAPFSKKLWPSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
WAKKVWISDWGIGFMLLLLLLWSINFGLNSMISLYLGPLIVVNIWLVIYTWLHHTDTDVP
HHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HLGASQFSYMRGAFLSIDRPYGRIFDFLHHSIGSTHVIHHIEPTVPHYHARLATRILKNK
CCCHHHHHHHHHHHEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHC
FPKVYLYNPTPIHKSLWHIATNCVAVKKDYAIDRYVWKQPDYSQS
CCEEEEECCCCHHHHHHHHHHHHHEECCCCCHHHHHCCCCCCCCC
>Mature Secondary Structure
MKKSLFTRFERVNTETNNRTFLPSGLNGKALDISLDDIPSRKEVRDTIPKHCFTRQTKRS
CCHHHHHHHHHHCCCCCCCEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
LFYLSRTVVIQIFVVLIGLSIPLTKGMIPIWILYAILSGTTSMGLWVLAHECGHGAFSDN
HHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHCCCHHHHHEEEHHCCCCCCCCC
RKLETLVGYCLHSFLLVPYFSWQRSHAVHHAFTNHITDGETHVPVVISGDGKSEKKGGEN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHH
EMESSLFFGKILYGFNQLFLHLILGWPAYLLLGKTGGPRYGTSNHFWPTAPFSKKLWPSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
WAKKVWISDWGIGFMLLLLLLWSINFGLNSMISLYLGPLIVVNIWLVIYTWLHHTDTDVP
HHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HLGASQFSYMRGAFLSIDRPYGRIFDFLHHSIGSTHVIHHIEPTVPHYHARLATRILKNK
CCCHHHHHHHHHHHEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHC
FPKVYLYNPTPIHKSLWHIATNCVAVKKDYAIDRYVWKQPDYSQS
CCEEEEECCCCHHHHHHHHHHHHHEECCCCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA