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The map label for this gene is yggS [C]

Identifier: 124025159

GI number: 124025159

Start: 408182

End: 408823

Strand: Direct

Name: yggS [C]

Synonym: NATL1_04461

Alternate gene names: 124025159

Gene position: 408182-408823 (Clockwise)

Preceding gene: 124025158

Following gene: 124025160

Centisome position: 21.89

GC content: 32.24

Gene sequence:

>642_bases
TTGATTTTGACTGGTTCTAATGAATTTAAGAAAATTAAAGACTCTATCCCTCTTGGGGTAAATTTACTTGCTGTAAGTAA
GGGGCATAAGCATGACTCGATACGTAAACTTTATGGTTATGGTCAGTTGGATTTTGGAGAAAGTCGTTTGCAAGAGGCCA
TCCTAAAAAAAATCGATCTAAGTGATTTAACTCAACTCAGATGGCATTTTGTTGGAACATTGCAGAAAAATAAAGTTAGA
AGAGTTATTAAAGAATTTGACTTTATTCATTCTGTTGATTCATTGCCTTTGCTTGAACGTATTTCTAGAATTTCACAAGA
AGAGCAAAAATCTCCGAATATATTTTTACAAGTTAAATTTATAGAGGACCCCAACAAGGGTGGATTTTTAAAAGAAGAAC
TTTTGAAAAGTTGGTCTAATATTATTTCTTTGAAGAATATTAATTTGATTGGATTAATGACAATACCGCCAATAGTTCTT
AATTCATTTCAAAGAAAAGATTTATTTTGTGAATGTAGAAATTTTGCAAATCATTTGGGATTAAAGGATTGCTCAATGGG
AATGAGCAACGATTGGCAAGAAGCTATTCAAGGTGGTGCTACTTGGATTCGATTGGGATCTCTTTTGTTTGGTAAACGTT
AG

Upstream 100 bases:

>100_bases
ATTCGGAAATGCATTTGGCTAAATGTAGAAGAGAAAAATCGTCCGATATGGATGTTTGGCAAGAACTATTTAATCAAACT
TTTATGTAACTCTATTTGAC

Downstream 100 bases:

>100_bases
AATTAGATAAATTGTCGAAGATATGAAAAAACTAATAAAAAAGCTTGCCCCTTAAGTTAAGGAACGTTATTTAAGTATAT
GGTTCATCCTTCATGTTGTT

Product: TIM-barrel fold family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MILTGSNEFKKIKDSIPLGVNLLAVSKGHKHDSIRKLYGYGQLDFGESRLQEAILKKIDLSDLTQLRWHFVGTLQKNKVR
RVIKEFDFIHSVDSLPLLERISRISQEEQKSPNIFLQVKFIEDPNKGGFLKEELLKSWSNIISLKNINLIGLMTIPPIVL
NSFQRKDLFCECRNFANHLGLKDCSMGMSNDWQEAIQGGATWIRLGSLLFGKR

Sequences:

>Translated_213_residues
MILTGSNEFKKIKDSIPLGVNLLAVSKGHKHDSIRKLYGYGQLDFGESRLQEAILKKIDLSDLTQLRWHFVGTLQKNKVR
RVIKEFDFIHSVDSLPLLERISRISQEEQKSPNIFLQVKFIEDPNKGGFLKEELLKSWSNIISLKNINLIGLMTIPPIVL
NSFQRKDLFCECRNFANHLGLKDCSMGMSNDWQEAIQGGATWIRLGSLLFGKR
>Mature_213_residues
MILTGSNEFKKIKDSIPLGVNLLAVSKGHKHDSIRKLYGYGQLDFGESRLQEAILKKIDLSDLTQLRWHFVGTLQKNKVR
RVIKEFDFIHSVDSLPLLERISRISQEEQKSPNIFLQVKFIEDPNKGGFLKEELLKSWSNIISLKNINLIGLMTIPPIVL
NSFQRKDLFCECRNFANHLGLKDCSMGMSNDWQEAIQGGATWIRLGSLLFGKR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=225, Percent_Identity=29.3333333333333, Blast_Score=89, Evalue=4e-18,
Organism=Escherichia coli, GI1789321, Length=207, Percent_Identity=33.8164251207729, Blast_Score=105, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17533025, Length=214, Percent_Identity=32.7102803738318, Blast_Score=71, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6319435, Length=211, Percent_Identity=32.2274881516588, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI45550861, Length=225, Percent_Identity=31.5555555555556, Blast_Score=96, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24385; Mature: 24385

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILTGSNEFKKIKDSIPLGVNLLAVSKGHKHDSIRKLYGYGQLDFGESRLQEAILKKIDL
CEECCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCH
SDLTQLRWHFVGTLQKNKVRRVIKEFDFIHSVDSLPLLERISRISQEEQKSPNIFLQVKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE
IEDPNKGGFLKEELLKSWSNIISLKNINLIGLMTIPPIVLNSFQRKDLFCECRNFANHLG
EECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHCHHHHHCHHHHHHHHHHHHHHHHCC
LKDCSMGMSNDWQEAIQGGATWIRLGSLLFGKR
CCHHCCCCCCCHHHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MILTGSNEFKKIKDSIPLGVNLLAVSKGHKHDSIRKLYGYGQLDFGESRLQEAILKKIDL
CEECCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCH
SDLTQLRWHFVGTLQKNKVRRVIKEFDFIHSVDSLPLLERISRISQEEQKSPNIFLQVKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE
IEDPNKGGFLKEELLKSWSNIISLKNINLIGLMTIPPIVLNSFQRKDLFCECRNFANHLG
EECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHCHHHHHCHHHHHHHHHHHHHHHHCC
LKDCSMGMSNDWQEAIQGGATWIRLGSLLFGKR
CCHHCCCCCCCHHHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]