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The map label for this gene is degT [H]

Identifier: 124025077

GI number: 124025077

Start: 336524

End: 337693

Strand: Direct

Name: degT [H]

Synonym: NATL1_03641

Alternate gene names: 124025077

Gene position: 336524-337693 (Clockwise)

Preceding gene: 124025076

Following gene: 124025081

Centisome position: 18.05

GC content: 31.54

Gene sequence:

>1170_bases
ATGCAAATACCTCCTTTTAGTCTTGAAGCTCAAATTTCTGAAATTGGAGACGAGATTGAAGAAGCTTTAATTAAGGTTTT
CAGAAGCGGAAAATATATTGGAGGAGAGGAAGTAGCTTCGTTCGAAAAAGCTTTTGCCTTAGCAATAGAAACTTCTTACT
CAGTTAGTTGTAATAGTGGAACAGATGCATTAATTCTTGCTTTAAGAGCACTAAATATTGGACAAGGTGATGAGGTGATC
ACCTCATCATTTAGTTTTTTTGCTACTGCAGAAGCAATCACAAGTGTTGGAGCTAGGCCAGTTTTTGTAGATATTGATTC
TAAAAACTATCTTATGGATCTGGATTTAATAGAAAAAGCAATAACTCCCAGAACAAAAGCTATTTTGCCTGTGCATTTGT
TTGGTCATCCACTAGATATGGATAAAATAATTGCAATTGCTGAATCCAATAATCTTAAGGTTGTAGAAGATTGTGCTCAA
GCAGCTGGGGCGTATTGGGGAGGTAAACCTGTTGGAAGTTATGGGGATATAGGTTGTTTTAGTTTTTTCCCTACTAAAAA
CTTAGGTGCAGCAGGAGATGGAGGAGCTATAACTACTAATGATTTTGATCTAGCAAAAACAATTAGGGAACTAGCTATTC
ATGGGATGCCAAAGAGATATTTTCATACAAGTATTGGATATAACAGTCGACTTGATTCATTACAAGCTGCAATATTAAAT
GTTAAGTTAATCCGATTAAATAAATGGATTGAGCAAAGAAAAGAAATAGCTATTAATTACATAAATCAGTTATCATCTAT
AGATTCAATTGAATTACCATCTAATACTTTTGTTAATAATTCTGGTCATTCTTGGAATCAATTTGTAATCAGAATAATGG
ACAATTCTTTTATTAAAAATATAAAATCTAACTCAGATGATGTTTTTGATAATCTAAATAGAGATCTATTTAAAACTGAA
CTTCATAGGCTTGGTGTAAATACAATAATTTATTACCCAATACCCATACATCTTCAACCAGCATATAAAAATTTAGAGTA
TAAAGAAGGATCTCTTCCTGTTACTGAAAAAGTATGTAGTCAGGTTATTAGTTTACCTATTTTCCCAGAATTAAAATCTA
TTCAGCAATCATATGTCATTGATAAAATAAAAGAACTATTTAAAAAATAA

Upstream 100 bases:

>100_bases
TTGCAACATAAAATGGCATCCAGGTATGGAGCCTGAGTGGTTTGGATGAATTAATGAGAGTCTTTTAATTGTTCATCGTT
GCAACTTAATTTAAATAGTT

Downstream 100 bases:

>100_bases
GTTATTTAATATTCGAATATAATTCTTTGAAGATTGATGTTTGATTTTTGTGATTTATTATTGGGTTGGGATAGCTATTT
CTCTCCGCAGAACTTATTTC

Product: putative pleiotropic regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MQIPPFSLEAQISEIGDEIEEALIKVFRSGKYIGGEEVASFEKAFALAIETSYSVSCNSGTDALILALRALNIGQGDEVI
TSSFSFFATAEAITSVGARPVFVDIDSKNYLMDLDLIEKAITPRTKAILPVHLFGHPLDMDKIIAIAESNNLKVVEDCAQ
AAGAYWGGKPVGSYGDIGCFSFFPTKNLGAAGDGGAITTNDFDLAKTIRELAIHGMPKRYFHTSIGYNSRLDSLQAAILN
VKLIRLNKWIEQRKEIAINYINQLSSIDSIELPSNTFVNNSGHSWNQFVIRIMDNSFIKNIKSNSDDVFDNLNRDLFKTE
LHRLGVNTIIYYPIPIHLQPAYKNLEYKEGSLPVTEKVCSQVISLPIFPELKSIQQSYVIDKIKELFKK

Sequences:

>Translated_389_residues
MQIPPFSLEAQISEIGDEIEEALIKVFRSGKYIGGEEVASFEKAFALAIETSYSVSCNSGTDALILALRALNIGQGDEVI
TSSFSFFATAEAITSVGARPVFVDIDSKNYLMDLDLIEKAITPRTKAILPVHLFGHPLDMDKIIAIAESNNLKVVEDCAQ
AAGAYWGGKPVGSYGDIGCFSFFPTKNLGAAGDGGAITTNDFDLAKTIRELAIHGMPKRYFHTSIGYNSRLDSLQAAILN
VKLIRLNKWIEQRKEIAINYINQLSSIDSIELPSNTFVNNSGHSWNQFVIRIMDNSFIKNIKSNSDDVFDNLNRDLFKTE
LHRLGVNTIIYYPIPIHLQPAYKNLEYKEGSLPVTEKVCSQVISLPIFPELKSIQQSYVIDKIKELFKK
>Mature_389_residues
MQIPPFSLEAQISEIGDEIEEALIKVFRSGKYIGGEEVASFEKAFALAIETSYSVSCNSGTDALILALRALNIGQGDEVI
TSSFSFFATAEAITSVGARPVFVDIDSKNYLMDLDLIEKAITPRTKAILPVHLFGHPLDMDKIIAIAESNNLKVVEDCAQ
AAGAYWGGKPVGSYGDIGCFSFFPTKNLGAAGDGGAITTNDFDLAKTIRELAIHGMPKRYFHTSIGYNSRLDSLQAAILN
VKLIRLNKWIEQRKEIAINYINQLSSIDSIELPSNTFVNNSGHSWNQFVIRIMDNSFIKNIKSNSDDVFDNLNRDLFKTE
LHRLGVNTIIYYPIPIHLQPAYKNLEYKEGSLPVTEKVCSQVISLPIFPELKSIQQSYVIDKIKELFKK

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=397, Percent_Identity=32.9974811083123, Blast_Score=188, Evalue=5e-49,
Organism=Escherichia coli, GI2367285, Length=343, Percent_Identity=34.1107871720117, Blast_Score=154, Evalue=7e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 43173; Mature: 43173

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIPPFSLEAQISEIGDEIEEALIKVFRSGKYIGGEEVASFEKAFALAIETSYSVSCNSG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEEEECCEEEECCCC
TDALILALRALNIGQGDEVITSSFSFFATAEAITSVGARPVFVDIDSKNYLMDLDLIEKA
CHHHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHCCCCEEEEEECCCCEEEEHHHHHHH
ITPRTKAILPVHLFGHPLDMDKIIAIAESNNLKVVEDCAQAAGAYWGGKPVGSYGDIGCF
CCCCCCEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEE
SFFPTKNLGAAGDGGAITTNDFDLAKTIRELAIHGMPKRYFHTSIGYNSRLDSLQAAILN
EECCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCHHHHEECCCCCHHHHHHHHHHHH
VKLIRLNKWIEQRKEIAINYINQLSSIDSIELPSNTFVNNSGHSWNQFVIRIMDNSFIKN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHH
IKSNSDDVFDNLNRDLFKTELHRLGVNTIIYYPIPIHLQPAYKNLEYKEGSLPVTEKVCS
HCCCCHHHHHHCCHHHHHHHHHHCCCCEEEEEECEEEECHHHCCCCCCCCCCCHHHHHHH
QVISLPIFPELKSIQQSYVIDKIKELFKK
HHHCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQIPPFSLEAQISEIGDEIEEALIKVFRSGKYIGGEEVASFEKAFALAIETSYSVSCNSG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEEEECCEEEECCCC
TDALILALRALNIGQGDEVITSSFSFFATAEAITSVGARPVFVDIDSKNYLMDLDLIEKA
CHHHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHCCCCEEEEEECCCCEEEEHHHHHHH
ITPRTKAILPVHLFGHPLDMDKIIAIAESNNLKVVEDCAQAAGAYWGGKPVGSYGDIGCF
CCCCCCEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEE
SFFPTKNLGAAGDGGAITTNDFDLAKTIRELAIHGMPKRYFHTSIGYNSRLDSLQAAILN
EECCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCHHHHEECCCCCHHHHHHHHHHHH
VKLIRLNKWIEQRKEIAINYINQLSSIDSIELPSNTFVNNSGHSWNQFVIRIMDNSFIKN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHH
IKSNSDDVFDNLNRDLFKTELHRLGVNTIIYYPIPIHLQPAYKNLEYKEGSLPVTEKVCS
HCCCCHHHHHHCCHHHHHHHHHHCCCCEEEEEECEEEECHHHCCCCCCCCCCCHHHHHHH
QVISLPIFPELKSIQQSYVIDKIKELFKK
HHHCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]