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The map label for this gene is ybeY [C]

Identifier: 124024971

GI number: 124024971

Start: 236821

End: 237375

Strand: Direct

Name: ybeY [C]

Synonym: NATL1_02581

Alternate gene names: 124024971

Gene position: 236821-237375 (Clockwise)

Preceding gene: 124024970

Following gene: 124024972

Centisome position: 12.7

GC content: 36.4

Gene sequence:

>555_bases
ATGGGAAATTCCTCGACAAGCTCTGATAAATTAGATATAGATCTTTGTTTTACACCCTTCCCAGTTCAAGATCTGGATGT
CTTTGTGAACAGTGACACTTTAGAGTTGATGAAAAATCCAAGTAAATGGATTGAGGAGATAGGGAGCTGGATTAGATTTA
TACAAGTAAATTCAGCATTGAAGTGTCCGGAAATAGTCCTAAATTCGTCTCAATTTAGCTTGGGGTTGGAATTAACTAAT
GATAAGAAAATTCTTGATTTGAATCATGCTTGGCTTGGTCAATCAAAAACTACAGATGTGCTTTCATTTCCCATAATTGA
TGAGACATTCTTTGGTGTAAGTAATGAATGTATCGAATTGGGTGACATAGTTATCTCAGTCCCGACAGCAATCAGGCAAG
CCAAAGATAATAATGCTGATTTATTTAGAGAACTAAGATGGCTTGCCACTCATGGTCTTTTACACCTTTTGGGTTGGGAC
CATAGCGACGAAGAGAGCCTTAATAAAATGCTTTTGATTCAAGAGCAACTTCTTGATATTAGAGGTATTCTTTAA

Upstream 100 bases:

>100_bases
AGTCAAAGTCTTTCTCATTTTGGGTTAACAGCTTTGGGTTTCCTTGGATTTATTCTTTTAGTTGCTGTGCTTGGTAAACC
TCATATCCCTCAATAACTTT

Downstream 100 bases:

>100_bases
AATAAAGAGTTGAAGAGTCAAAAATATGGTTCCTGAGATATCGAATGACTCTAAGAGAGAAGTTAGGGACATGTCTAAAA
CTCTTCAAAGAGCCAATAAA

Product: metal-dependent hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MGNSSTSSDKLDIDLCFTPFPVQDLDVFVNSDTLELMKNPSKWIEEIGSWIRFIQVNSALKCPEIVLNSSQFSLGLELTN
DKKILDLNHAWLGQSKTTDVLSFPIIDETFFGVSNECIELGDIVISVPTAIRQAKDNNADLFRELRWLATHGLLHLLGWD
HSDEESLNKMLLIQEQLLDIRGIL

Sequences:

>Translated_184_residues
MGNSSTSSDKLDIDLCFTPFPVQDLDVFVNSDTLELMKNPSKWIEEIGSWIRFIQVNSALKCPEIVLNSSQFSLGLELTN
DKKILDLNHAWLGQSKTTDVLSFPIIDETFFGVSNECIELGDIVISVPTAIRQAKDNNADLFRELRWLATHGLLHLLGWD
HSDEESLNKMLLIQEQLLDIRGIL
>Mature_183_residues
GNSSTSSDKLDIDLCFTPFPVQDLDVFVNSDTLELMKNPSKWIEEIGSWIRFIQVNSALKCPEIVLNSSQFSLGLELTND
KKILDLNHAWLGQSKTTDVLSFPIIDETFFGVSNECIELGDIVISVPTAIRQAKDNNADLFRELRWLATHGLLHLLGWDH
SDEESLNKMLLIQEQLLDIRGIL

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 20787; Mature: 20656

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNSSTSSDKLDIDLCFTPFPVQDLDVFVNSDTLELMKNPSKWIEEIGSWIRFIQVNSAL
CCCCCCCCCCEEEEEEECCCCCCCEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHCCCC
KCPEIVLNSSQFSLGLELTNDKKILDLNHAWLGQSKTTDVLSFPIIDETFFGVSNECIEL
CCHHHEECCCCEEEEEEECCCCEEEECCHHHCCCCCCCCEEECCCHHHHHCCCCHHHHHH
GDIVISVPTAIRQAKDNNADLFRELRWLATHGLLHLLGWDHSDEESLNKMLLIQEQLLDI
HHEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
RGIL
HCCC
>Mature Secondary Structure 
GNSSTSSDKLDIDLCFTPFPVQDLDVFVNSDTLELMKNPSKWIEEIGSWIRFIQVNSAL
CCCCCCCCCEEEEEEECCCCCCCEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHCCCC
KCPEIVLNSSQFSLGLELTNDKKILDLNHAWLGQSKTTDVLSFPIIDETFFGVSNECIEL
CCHHHEECCCCEEEEEEECCCCEEEECCHHHCCCCCCCCEEECCCHHHHHCCCCHHHHHH
GDIVISVPTAIRQAKDNNADLFRELRWLATHGLLHLLGWDHSDEESLNKMLLIQEQLLDI
HHEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
RGIL
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA