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The map label for this gene is ycf3

Identifier: 124024917

GI number: 124024917

Start: 190286

End: 190807

Strand: Direct

Name: ycf3

Synonym: NATL1_02041

Alternate gene names: 124024917

Gene position: 190286-190807 (Clockwise)

Preceding gene: 124024913

Following gene: 124024919

Centisome position: 10.2

GC content: 36.02

Gene sequence:

>522_bases
GTGCCTAGAAGTCAAAACAAAGACAATTTTCTTGATAAGGCCTTCACGAAGATGGCTGAGGGAATAGTGAAAGTGATGCC
AATCGACTCCAAAGAAAAAGAAGCCTATCTTTATTACAGAAAAGGTTTGGCAGCTCAAAATGATGGAGATTACTCAGAGG
CTCTGGAGTATTACGAAGAAAGCTTAAAACTTGAGGACAATCAAGTTGATAGAGGAGAGACATTAAAAAATATGGCAATA
ATTTATATGAGTAATGGAGACGAAGAGAGAGCATTAAATACATATAAAAAAGCTTTAGGACAAAATCCCAAACAGCCATC
TTGCTTGAAAAATATGGGATTAATTTATGAAAAAAGAGGAAGAATGGCTCAAAGAAATGGTAATCAAGATGAGTGTGATA
TTTGGTTCGATCAGGCGGCGGAAGTTTGGAGTAAAGCTGTTCGTTTATACCCAGGAGGATATTTAGATATAGAAAATTGG
CTGAAGACTACAGGCAGAGGTAATGTTGATGTTTATTTATAA

Upstream 100 bases:

>100_bases
TAATGATTTATTAATACATAAAAATTAGTTTCATTATTTCTATACATTTTTTTTATTTTCAGGCAGGATAGAATCATAAT
GTATTGATATTGGTTCAATC

Downstream 100 bases:

>100_bases
GTAACTAAAACGCGGATTAATTATTATCTAAAGCATATATTAAAGCTTGATTAATATTAGAAGCTTTTAATATTTTTAAT
TTTTGATTCGTTTCAAACTC

Product: photosystem I assembly protein Ycf3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MPRSQNKDNFLDKAFTKMAEGIVKVMPIDSKEKEAYLYYRKGLAAQNDGDYSEALEYYEESLKLEDNQVDRGETLKNMAI
IYMSNGDEERALNTYKKALGQNPKQPSCLKNMGLIYEKRGRMAQRNGNQDECDIWFDQAAEVWSKAVRLYPGGYLDIENW
LKTTGRGNVDVYL

Sequences:

>Translated_173_residues
MPRSQNKDNFLDKAFTKMAEGIVKVMPIDSKEKEAYLYYRKGLAAQNDGDYSEALEYYEESLKLEDNQVDRGETLKNMAI
IYMSNGDEERALNTYKKALGQNPKQPSCLKNMGLIYEKRGRMAQRNGNQDECDIWFDQAAEVWSKAVRLYPGGYLDIENW
LKTTGRGNVDVYL
>Mature_172_residues
PRSQNKDNFLDKAFTKMAEGIVKVMPIDSKEKEAYLYYRKGLAAQNDGDYSEALEYYEESLKLEDNQVDRGETLKNMAII
YMSNGDEERALNTYKKALGQNPKQPSCLKNMGLIYEKRGRMAQRNGNQDECDIWFDQAAEVWSKAVRLYPGGYLDIENWL
KTTGRGNVDVYL

Specific function: Seems to be required for the assembly of the photosystem I complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCF3_PROM1 (A2BZV8)

Other databases:

- EMBL:   CP000553
- RefSeq:   YP_001014033.1
- ProteinModelPortal:   A2BZV8
- STRING:   A2BZV8
- GeneID:   4779891
- GenomeReviews:   CP000553_GR
- KEGG:   pme:NATL1_02041
- eggNOG:   COG0457
- HOGENOM:   HBG285147
- OMA:   NWLKTTG
- ProtClustDB:   PRK02603
- BioCyc:   PMAR167555:NATL1_02041-MONOMER
- GO:   GO:0005488
- GO:   GO:0015979
- HAMAP:   MF_00439
- InterPro:   IPR022818
- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734
- Gene3D:   G3DSA:1.25.40.10

Pfam domain/function: PF00515 TPR_1

EC number: NA

Molecular weight: Translated: 19949; Mature: 19817

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50005 TPR; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRSQNKDNFLDKAFTKMAEGIVKVMPIDSKEKEAYLYYRKGLAAQNDGDYSEALEYYEE
CCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHH
SLKLEDNQVDRGETLKNMAIIYMSNGDEERALNTYKKALGQNPKQPSCLKNMGLIYEKRG
HHCCCCCCCCCCHHHHCEEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHCC
RMAQRNGNQDECDIWFDQAAEVWSKAVRLYPGGYLDIENWLKTTGRGNVDVYL
CHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCCEEEEC
>Mature Secondary Structure 
PRSQNKDNFLDKAFTKMAEGIVKVMPIDSKEKEAYLYYRKGLAAQNDGDYSEALEYYEE
CCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHH
SLKLEDNQVDRGETLKNMAIIYMSNGDEERALNTYKKALGQNPKQPSCLKNMGLIYEKRG
HHCCCCCCCCCCHHHHCEEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHCC
RMAQRNGNQDECDIWFDQAAEVWSKAVRLYPGGYLDIENWLKTTGRGNVDVYL
CHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA