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The map label for this gene is ybbD [H]

Identifier: 124024899

GI number: 124024899

Start: 173742

End: 175376

Strand: Direct

Name: ybbD [H]

Synonym: NATL1_01861

Alternate gene names: 124024899

Gene position: 173742-175376 (Clockwise)

Preceding gene: 124024898

Following gene: 124024900

Centisome position: 9.32

GC content: 30.15

Gene sequence:

>1635_bases
ATGAATAAATCTGATCTTAGAAGACAAGTAGCTGAATTATTTATAGTTCGAGCAAGTGGATTTAATCTTGATTCGCAACG
TCTATACCCTAACTTAGAGGAATCTAATTCAAATCTAAAAAGACTTTTAGAAGAAGGTGTTGGTGGAGTTATTGTTCTAG
GAGGAACTGTAAAAGAATTAGAAATTCGTTGCAATATCTTAAAAAAATGGTCTGGTAAACCTCTTCTTTTATGTGCTGAC
ATTGAGGAAGGTGTTGGTCAAAGATTTTATGGAGGAATAAAGTTTGTTCCTCCAATGGGTATTTCTCAGATTTATAAAAA
AGATCAAACTTTAGCAATTTCTATTGCTGAGAAAATTGGTTATTTTACTGGTAAAGAAGCAAAAAAGATTGGTTTAAATT
GGCTATTAGCCCCAGTCTGTGATATTAATAACAATCCAAATAACCCAGTTATAAATCTAAGAGCTTGGGGAGAAGAGCCT
GAAACAGTAAAAAGTTTAACTTGTGCTTTTCAGCGCGGTGTTTCTAGATCAAAAATGCTGACTTGTGCGAAACATTTTCC
TGGGCATGGAAATTCTGAAGTTGACTCTCACTTGGATTTGCCAGAAATACATAATGACTTATCTAAATTAGAGAAATTTG
AGTTAATTCCATTTAAGTCTTTAATCAATCAAGGAGTAAATAGTGTCATGATCGGGCATTTACTTTTTCCAAAGATTGAT
CCTATTTTTCCTGCAACACTTTCAAAAAGAGTGGTTACTGATTTGTTACGTATCAAATTTAAATACGATGGTTTAGTAGT
CAGTGATGCCTTAGTTATGAATGCAATAACAAATAAATATAGTAGTGGTGAGGCTGCAGTTATGGCATTTGATGCAGGAA
TTGATTTGATTATGATGCCAAAAGATATTGATGAGGCAATTGATTCTCTTGCCGATGCTTTTTATTCAGGAAAAATTTCT
TTAGAAAGGTTAAATATATCTAGAGAAAGAAGAAAAAAACAACTTGATTTAGTTAGCAACGAAGATGATTTTAAAAAAGA
AGATTTGAACAATGAAGATATTAAAAATGAATTTTTATTGGATGCTTCTAAATTTAGTAATTCTATAATAAAAAGTTCAA
TTTTTGTCCGAGAAGAAAGTACTATAAAAGCTGAATTTAATGATATAAATCTTATACAAATTGATAATTTTGATCAAGTA
CCTAATAAATTTATTCCTGCATTAGATATCCCTAAGGCAGTAGGTTTTAAAAATTTAATTATACATCCACTTGGTATCAG
TCCGTGGGGAAAAACTAATAAGAAATTTTTAGAAATGGGGCAATTTAGCAATAGTAAGATTCTTGTTCAGCTTTTTGTGA
GAGGTAAACCATTTATTGGATTAGATTATCATAATGATCATTGGATAGATGCACTAAAAAGTTTAGAAATTGAGGAAAGA
TTATCAGGAATTATAATTTATGGGTGTCCATATTTATTTGATAAAATAAAAAAATCTATTCATAAAAATATTCCTTTAGC
TTATAGCCCTAGTCAAACAGAGGAAGCACAAAATCAAATTTTAAGTCGTATTTTGCAATCAAAAACAACTCAAAAGGAAA
TTGATAAAGAATCAAGCATAGAATTTACTGATTGA

Upstream 100 bases:

>100_bases
TTGATAAAGGCATGACAAAAGGTCCTGAAGTTTTAGATCTTCTTAATGCATTAGAACTTGAACGTAAAAGTAAAGACTTA
TAGATCAATCAAAATTCTTG

Downstream 100 bases:

>100_bases
AAATTGTTTAATTGAGAATTTGGTATTCAAGAAAAAACCTTATTGTTATTTAAATAACTGCATAGTTATTCTTTAGACTT
CTTAGAAAGAAGCATACAGA

Product: beta-N-acetylglucosaminidase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 544; Mature: 544

Protein sequence:

>544_residues
MNKSDLRRQVAELFIVRASGFNLDSQRLYPNLEESNSNLKRLLEEGVGGVIVLGGTVKELEIRCNILKKWSGKPLLLCAD
IEEGVGQRFYGGIKFVPPMGISQIYKKDQTLAISIAEKIGYFTGKEAKKIGLNWLLAPVCDINNNPNNPVINLRAWGEEP
ETVKSLTCAFQRGVSRSKMLTCAKHFPGHGNSEVDSHLDLPEIHNDLSKLEKFELIPFKSLINQGVNSVMIGHLLFPKID
PIFPATLSKRVVTDLLRIKFKYDGLVVSDALVMNAITNKYSSGEAAVMAFDAGIDLIMMPKDIDEAIDSLADAFYSGKIS
LERLNISRERRKKQLDLVSNEDDFKKEDLNNEDIKNEFLLDASKFSNSIIKSSIFVREESTIKAEFNDINLIQIDNFDQV
PNKFIPALDIPKAVGFKNLIIHPLGISPWGKTNKKFLEMGQFSNSKILVQLFVRGKPFIGLDYHNDHWIDALKSLEIEER
LSGIIIYGCPYLFDKIKKSIHKNIPLAYSPSQTEEAQNQILSRILQSKTTQKEIDKESSIEFTD

Sequences:

>Translated_544_residues
MNKSDLRRQVAELFIVRASGFNLDSQRLYPNLEESNSNLKRLLEEGVGGVIVLGGTVKELEIRCNILKKWSGKPLLLCAD
IEEGVGQRFYGGIKFVPPMGISQIYKKDQTLAISIAEKIGYFTGKEAKKIGLNWLLAPVCDINNNPNNPVINLRAWGEEP
ETVKSLTCAFQRGVSRSKMLTCAKHFPGHGNSEVDSHLDLPEIHNDLSKLEKFELIPFKSLINQGVNSVMIGHLLFPKID
PIFPATLSKRVVTDLLRIKFKYDGLVVSDALVMNAITNKYSSGEAAVMAFDAGIDLIMMPKDIDEAIDSLADAFYSGKIS
LERLNISRERRKKQLDLVSNEDDFKKEDLNNEDIKNEFLLDASKFSNSIIKSSIFVREESTIKAEFNDINLIQIDNFDQV
PNKFIPALDIPKAVGFKNLIIHPLGISPWGKTNKKFLEMGQFSNSKILVQLFVRGKPFIGLDYHNDHWIDALKSLEIEER
LSGIIIYGCPYLFDKIKKSIHKNIPLAYSPSQTEEAQNQILSRILQSKTTQKEIDKESSIEFTD
>Mature_544_residues
MNKSDLRRQVAELFIVRASGFNLDSQRLYPNLEESNSNLKRLLEEGVGGVIVLGGTVKELEIRCNILKKWSGKPLLLCAD
IEEGVGQRFYGGIKFVPPMGISQIYKKDQTLAISIAEKIGYFTGKEAKKIGLNWLLAPVCDINNNPNNPVINLRAWGEEP
ETVKSLTCAFQRGVSRSKMLTCAKHFPGHGNSEVDSHLDLPEIHNDLSKLEKFELIPFKSLINQGVNSVMIGHLLFPKID
PIFPATLSKRVVTDLLRIKFKYDGLVVSDALVMNAITNKYSSGEAAVMAFDAGIDLIMMPKDIDEAIDSLADAFYSGKIS
LERLNISRERRKKQLDLVSNEDDFKKEDLNNEDIKNEFLLDASKFSNSIIKSSIFVREESTIKAEFNDINLIQIDNFDQV
PNKFIPALDIPKAVGFKNLIIHPLGISPWGKTNKKFLEMGQFSNSKILVQLFVRGKPFIGLDYHNDHWIDALKSLEIEER
LSGIIIYGCPYLFDKIKKSIHKNIPLAYSPSQTEEAQNQILSRILQSKTTQKEIDKESSIEFTD

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=239, Percent_Identity=26.3598326359833, Blast_Score=92, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.21

Molecular weight: Translated: 61280; Mature: 61280

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSDLRRQVAELFIVRASGFNLDSQRLYPNLEESNSNLKRLLEEGVGGVIVLGGTVKEL
CCHHHHHHHHHHHEEEEECCCCCCHHHCCCCCCCCCHHHHHHHHCCCCEEEEECCCCEEH
EIRCNILKKWSGKPLLLCADIEEGVGQRFYGGIKFVPPMGISQIYKKDQTLAISIAEKIG
HHHHHHHHCCCCCEEEEEECCHHCCCHHHHCCEEECCCCCHHHHHHCCCEEEEEEHHHHC
YFTGKEAKKIGLNWLLAPVCDINNNPNNPVINLRAWGEEPETVKSLTCAFQRGVSRSKML
CCCCCHHHHHCCCEEEEEHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHH
TCAKHFPGHGNSEVDSHLDLPEIHNDLSKLEKFELIPFKSLINQGVNSVMIGHLLFPKID
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHCCCCC
PIFPATLSKRVVTDLLRIKFKYDGLVVSDALVMNAITNKYSSGEAAVMAFDAGIDLIMMP
CCCCHHHHHHHHHHHHHHEEEECCEEEHHHHHHHHHHCCCCCCCEEEEEEECCCCEEECC
KDIDEAIDSLADAFYSGKISLERLNISRERRKKQLDLVSNEDDFKKEDLNNEDIKNEFLL
CHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHE
DASKFSNSIIKSSIFVREESTIKAEFNDINLIQIDNFDQVPNKFIPALDIPKAVGFKNLI
EHHHHHHHHHHHHEEEECCCEEEEECCCEEEEEECCCHHCCHHCCCCCCCCHHCCCCCEE
IHPLGISPWGKTNKKFLEMGQFSNSKILVQLFVRGKPFIGLDYHNDHWIDALKSLEIEER
EEECCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCCCEEEECCCCCHHHHHHHHCCHHHH
LSGIIIYGCPYLFDKIKKSIHKNIPLAYSPSQTEEAQNQILSRILQSKTTQKEIDKESSI
HCCEEEECCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCC
EFTD
CCCC
>Mature Secondary Structure
MNKSDLRRQVAELFIVRASGFNLDSQRLYPNLEESNSNLKRLLEEGVGGVIVLGGTVKEL
CCHHHHHHHHHHHEEEEECCCCCCHHHCCCCCCCCCHHHHHHHHCCCCEEEEECCCCEEH
EIRCNILKKWSGKPLLLCADIEEGVGQRFYGGIKFVPPMGISQIYKKDQTLAISIAEKIG
HHHHHHHHCCCCCEEEEEECCHHCCCHHHHCCEEECCCCCHHHHHHCCCEEEEEEHHHHC
YFTGKEAKKIGLNWLLAPVCDINNNPNNPVINLRAWGEEPETVKSLTCAFQRGVSRSKML
CCCCCHHHHHCCCEEEEEHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHH
TCAKHFPGHGNSEVDSHLDLPEIHNDLSKLEKFELIPFKSLINQGVNSVMIGHLLFPKID
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHCCCCC
PIFPATLSKRVVTDLLRIKFKYDGLVVSDALVMNAITNKYSSGEAAVMAFDAGIDLIMMP
CCCCHHHHHHHHHHHHHHEEEECCEEEHHHHHHHHHHCCCCCCCEEEEEEECCCCEEECC
KDIDEAIDSLADAFYSGKISLERLNISRERRKKQLDLVSNEDDFKKEDLNNEDIKNEFLL
CHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHE
DASKFSNSIIKSSIFVREESTIKAEFNDINLIQIDNFDQVPNKFIPALDIPKAVGFKNLI
EHHHHHHHHHHHHEEEECCCEEEEECCCEEEEEECCCHHCCHHCCCCCCCCHHCCCCCEE
IHPLGISPWGKTNKKFLEMGQFSNSKILVQLFVRGKPFIGLDYHNDHWIDALKSLEIEER
EEECCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCCCEEEECCCCCHHHHHHHHCCHHHH
LSGIIIYGCPYLFDKIKKSIHKNIPLAYSPSQTEEAQNQILSRILQSKTTQKEIDKESSI
HCCEEEECCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCC
EFTD
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]