| Definition | Prochlorococcus marinus str. NATL1A, complete genome. |
|---|---|
| Accession | NC_008819 |
| Length | 1,864,731 |
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The map label for this gene is 124024885
Identifier: 124024885
GI number: 124024885
Start: 165918
End: 166859
Strand: Reverse
Name: 124024885
Synonym: NATL1_01721
Alternate gene names: NA
Gene position: 166859-165918 (Counterclockwise)
Preceding gene: 124024886
Following gene: 124024882
Centisome position: 8.95
GC content: 33.65
Gene sequence:
>942_bases ATGGGACCTTCAAGACTAAAGAGTCGTCGACGCCAAGATCTAGGTTCCAAATGGGCGAGAGTTGCAATAGCTATATTATC AACAGTTGGTGTTATAGATACAGGATCCATAACACTAAATAAATGGGGGATCATAGGAAATTTAAACTGTCCAGGTGGAT TAGGAGGCTGCGATAAAGTTTTAAATAGCCCTTGGGGGACTTTCTTTCAAACAAATAATTTCTCTATTCCATTATCATTA ATAGGTTTAATTAGTTATTTATTAATATTATTAATGGCAATATTCCCATTAACACCTATTCTCAAAAACCAAAAAACTAA TATCTCAAAAGTTGCATGGTGGGGATCTTTTTATATATCTACATCTACTTTTATTTTCAGCTTAATTTTAATATCAGTAA TGATATTTAAAATTAAAGCTTTCTGTTTCTTCTGTCTTCTTTCTTTTCTTATATCACTTTCAGTCCTATTATTAAATATA ATTGGAGGCAGTTGGGAAGATTATGGTAAGTTATTTTTTAGAGGTTTTCTTATGTCAGTAGCAGTTCTTTTAGCAGGGCT AATATGGTCATCATCAGTCGATCCTGCTATCAAGGAAGTTTCAAATAATATTTCAGGCATGCCACCTGCGGTAATAGCGA TAAGTTCTCCTAACAAAATAAAACTCGCTGAACATTTAACAGAAGAAGGAGCAGTCATGTATAACGCTTATTGGTGTCCA CATTGTCATGATCAAAAAGAAATGTTCGGGAAAGAAGCTGCAGAAAAATTAAATTTAGTTGAGTGTGCAAAAGATGGTTT TAACAACAAAAGAGAACTTTGTGAAGCTAAAGGGATCACTGGTTTCCCTTCTTGGGAAATTAATGGCTCAATTGATTCAG GAGTGAAAAGCCTAGAAGAATTAGCTGACCTTACCAATTACAAAGACTCTAAAGATTTTTAG
Upstream 100 bases:
>100_bases TTAAAATATACAGAACATTAGAATTAATTTAAATTATTCAGACTTAAAAGGAATTCTTCATTAGAATAAAAAAATATTCA ATTATTTAAAAATTACCTGC
Downstream 100 bases:
>100_bases GGAAGCCAGCTTTATCGACAATGGGTCTTGTATGAATGTTCTTTCCCTTCATTTGTCTAGTATGACATTGCCAAAAAGGA ACTGAGGTAGGGAAATCATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 313; Mature: 312
Protein sequence:
>313_residues MGPSRLKSRRRQDLGSKWARVAIAILSTVGVIDTGSITLNKWGIIGNLNCPGGLGGCDKVLNSPWGTFFQTNNFSIPLSL IGLISYLLILLMAIFPLTPILKNQKTNISKVAWWGSFYISTSTFIFSLILISVMIFKIKAFCFFCLLSFLISLSVLLLNI IGGSWEDYGKLFFRGFLMSVAVLLAGLIWSSSVDPAIKEVSNNISGMPPAVIAISSPNKIKLAEHLTEEGAVMYNAYWCP HCHDQKEMFGKEAAEKLNLVECAKDGFNNKRELCEAKGITGFPSWEINGSIDSGVKSLEELADLTNYKDSKDF
Sequences:
>Translated_313_residues MGPSRLKSRRRQDLGSKWARVAIAILSTVGVIDTGSITLNKWGIIGNLNCPGGLGGCDKVLNSPWGTFFQTNNFSIPLSL IGLISYLLILLMAIFPLTPILKNQKTNISKVAWWGSFYISTSTFIFSLILISVMIFKIKAFCFFCLLSFLISLSVLLLNI IGGSWEDYGKLFFRGFLMSVAVLLAGLIWSSSVDPAIKEVSNNISGMPPAVIAISSPNKIKLAEHLTEEGAVMYNAYWCP HCHDQKEMFGKEAAEKLNLVECAKDGFNNKRELCEAKGITGFPSWEINGSIDSGVKSLEELADLTNYKDSKDF >Mature_312_residues GPSRLKSRRRQDLGSKWARVAIAILSTVGVIDTGSITLNKWGIIGNLNCPGGLGGCDKVLNSPWGTFFQTNNFSIPLSLI GLISYLLILLMAIFPLTPILKNQKTNISKVAWWGSFYISTSTFIFSLILISVMIFKIKAFCFFCLLSFLISLSVLLLNII GGSWEDYGKLFFRGFLMSVAVLLAGLIWSSSVDPAIKEVSNNISGMPPAVIAISSPNKIKLAEHLTEEGAVMYNAYWCPH CHDQKEMFGKEAAEKLNLVECAKDGFNNKRELCEAKGITGFPSWEINGSIDSGVKSLEELADLTNYKDSKDF
Specific function: Unknown
COG id: COG4243
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34472; Mature: 34340
Theoretical pI: Translated: 8.38; Mature: 8.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGPSRLKSRRRQDLGSKWARVAIAILSTVGVIDTGSITLNKWGIIGNLNCPGGLGGCDKV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCEEEECCCEEECCCCCCCCCHHHHH LNSPWGTFFQTNNFSIPLSLIGLISYLLILLMAIFPLTPILKNQKTNISKVAWWGSFYIS HCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHH TSTFIFSLILISVMIFKIKAFCFFCLLSFLISLSVLLLNIIGGSWEDYGKLFFRGFLMSV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH AVLLAGLIWSSSVDPAIKEVSNNISGMPPAVIAISSPNKIKLAEHLTEEGAVMYNAYWCP HHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEEECC HCHDQKEMFGKEAAEKLNLVECAKDGFNNKRELCEAKGITGFPSWEINGSIDSGVKSLEE CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH LADLTNYKDSKDF HHHHHCCCCCCCC >Mature Secondary Structure GPSRLKSRRRQDLGSKWARVAIAILSTVGVIDTGSITLNKWGIIGNLNCPGGLGGCDKV CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCEEEECCCEEECCCCCCCCCHHHHH LNSPWGTFFQTNNFSIPLSLIGLISYLLILLMAIFPLTPILKNQKTNISKVAWWGSFYIS HCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHH TSTFIFSLILISVMIFKIKAFCFFCLLSFLISLSVLLLNIIGGSWEDYGKLFFRGFLMSV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH AVLLAGLIWSSSVDPAIKEVSNNISGMPPAVIAISSPNKIKLAEHLTEEGAVMYNAYWCP HHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEEECC HCHDQKEMFGKEAAEKLNLVECAKDGFNNKRELCEAKGITGFPSWEINGSIDSGVKSLEE CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH LADLTNYKDSKDF HHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA