Definition Prochlorococcus marinus str. MIT 9303, complete genome.
Accession NC_008820
Length 2,682,675

Click here to switch to the map view.

The map label for this gene is 124023686

Identifier: 124023686

GI number: 124023686

Start: 1746722

End: 1747261

Strand: Direct

Name: 124023686

Synonym: P9303_19861

Alternate gene names: NA

Gene position: 1746722-1747261 (Clockwise)

Preceding gene: 124023685

Following gene: 124023688

Centisome position: 65.11

GC content: 55.19

Gene sequence:

>540_bases
ATGCCGAGCTCGTTGTCGCAACGTCAAAGCCTGATGACGTTTCTGGGCTGGATGCTATGCCTGCTGATCGCTATCCCTGC
GCAGGCTCTCGACACCAGTTCAGGGGTTGGGCTACAGGATCAAGCTCTATTCCAAGAACGACTGGACTACACCCTCACCA
ACCAAAACGGGAAAGACTTCCACGCACAAGACCTCTCCAACACATCCTTCGCTGGTGCCGTTGCAAGAGCTGCCGACTTC
AGCAACAGCAATCTGCGTGGCGCGATCCTCACCCAAGGAACCTTTACCCAATCAAACTTCAGCGGCGCTGACCTCTCTGA
TGCACTGATGGATCGTGTCGACTTCGTCGATACGGATCTGCGCAATAGTGTCCTCAAAGGGGTGATTGCCTCAGGCAGCA
GCTTCGCAGGAGCGCAGATTGATGGTGCCGACTTCAGCGATGCGCTACTCGATCTTGATGACCAGCGCCGCCTTTGCCTT
GATGCCGACGGCATCAACCAAATCACCGGCATCGCAACCTTCGAGAGTTTGAATTGCTGA

Upstream 100 bases:

>100_bases
CAAATCCTCCTCCAGTTGTAGCTGGTTCCCTCTATTTATTAGGTGATCTTCTCGCAAAGCAAACCATCAAGGCAGAGTGA
GAGGTGTTGCCGTAAAGCCG

Downstream 100 bases:

>100_bases
ACGAATGGCTGTTACAACCAGCCCCTCAGCTTGCCTGGATTGAGCAGACCCTTGGGGTCATAACGACGCTTAGCCGCCAC
CTGATCGGCATCAACAACCC

Product: hypothetical protein

Products: NA

Alternate protein names: Pentapeptide Repeat Protein; Pentapeptide Repeat Family Protein; RfrA Pentapeptide Repeat-Containing Protein

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MPSSLSQRQSLMTFLGWMLCLLIAIPAQALDTSSGVGLQDQALFQERLDYTLTNQNGKDFHAQDLSNTSFAGAVARAADF
SNSNLRGAILTQGTFTQSNFSGADLSDALMDRVDFVDTDLRNSVLKGVIASGSSFAGAQIDGADFSDALLDLDDQRRLCL
DADGINQITGIATFESLNC

Sequences:

>Translated_179_residues
MPSSLSQRQSLMTFLGWMLCLLIAIPAQALDTSSGVGLQDQALFQERLDYTLTNQNGKDFHAQDLSNTSFAGAVARAADF
SNSNLRGAILTQGTFTQSNFSGADLSDALMDRVDFVDTDLRNSVLKGVIASGSSFAGAQIDGADFSDALLDLDDQRRLCL
DADGINQITGIATFESLNC
>Mature_178_residues
PSSLSQRQSLMTFLGWMLCLLIAIPAQALDTSSGVGLQDQALFQERLDYTLTNQNGKDFHAQDLSNTSFAGAVARAADFS
NSNLRGAILTQGTFTQSNFSGADLSDALMDRVDFVDTDLRNSVLKGVIASGSSFAGAQIDGADFSDALLDLDDQRRLCLD
ADGINQITGIATFESLNC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19113; Mature: 18982

Theoretical pI: Translated: 3.94; Mature: 3.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSSLSQRQSLMTFLGWMLCLLIAIPAQALDTSSGVGLQDQALFQERLDYTLTNQNGKDF
CCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHCCEEEECCCCCCC
HAQDLSNTSFAGAVARAADFSNSNLRGAILTQGTFTQSNFSGADLSDALMDRVDFVDTDL
CHHCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RNSVLKGVIASGSSFAGAQIDGADFSDALLDLDDQRRLCLDADGINQITGIATFESLNC
HHHHHHHHHHCCCCCCCCEECCCCHHHHHHCCCCCCCEEECCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
PSSLSQRQSLMTFLGWMLCLLIAIPAQALDTSSGVGLQDQALFQERLDYTLTNQNGKDF
CCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHCCEEEECCCCCCC
HAQDLSNTSFAGAVARAADFSNSNLRGAILTQGTFTQSNFSGADLSDALMDRVDFVDTDL
CHHCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RNSVLKGVIASGSSFAGAQIDGADFSDALLDLDDQRRLCLDADGINQITGIATFESLNC
HHHHHHHHHHCCCCCCCCEECCCCHHHHHHCCCCCCCEEECCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA