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The map label for this gene is yqgF [C]

Identifier: 124023439

GI number: 124023439

Start: 1521361

End: 1522005

Strand: Reverse

Name: yqgF [C]

Synonym: P9303_17391

Alternate gene names: 124023439

Gene position: 1522005-1521361 (Counterclockwise)

Preceding gene: 124023440

Following gene: 124023438

Centisome position: 56.73

GC content: 56.59

Gene sequence:

>645_bases
ATGGAAGCGTGCGGGAGAAGAGTTGCTGCTTGGTCGCAGTCTTTGGCGTCGCCAGGTAAGCAACAAGTTGCTTCTTGGAG
CTCGACCACTGCAATCGATGCTGGGGCGACTGCAACCACAGCAACCACCCCTCCCTACTCCAAGCCTGGGCCGACGTTAA
TGACGGCAACAAAACCCAGACCCAAATCCATTCTTAGTCTGGATTTGGGGAAGAGACGCATCGGCCTAGCAGGCTGCGAT
CCACTTGGCATCACGGTGAGTCCTCTACCACCGCTGCAGAGAAAAAGCTTCGACCGAGACCTAAAAGCATTGCAGCGGCA
CTGCACTAGTCGCAAAGTGGAAGGCCTGGTCGTGGGTTTGCCGCTCGATTCCAAAGGTCTGCCCACAGATCAAGCACGAC
ACTATGAGCGTTATGGACAACGCTTGGCGAGAGCTCTCAAGCTGCCTCTCGCTTTGGTCAATGAACACAGCAGTAGTTGG
GCTGCTGCTGAACGCTACAACTTGCAAGGCGATCGCAGTGGCCAGCTTGATAGCGCTGCGGCAGCACTTTTGCTCGAGCA
GTGGTTGCGAGAAGGTCCCGAACTGAAACCGGTCCACGTGGCGGCCCATCCAGTGAGCCAGGTGAACAGCGATAGTGGAG
CCTGA

Upstream 100 bases:

>100_bases
TGCCAAAAGTTTTGGCTGACCTTACGAGCATGTCCAAAACATTTCGACTGATCACTACCAGCGAAGACGAGCCGCTCAAT
ACTCTTCTCGAACAACTGAG

Downstream 100 bases:

>100_bases
GCAAATCAACCTCAGCTCCAATGACTGCCCCGGGTCCAAACATCAATGGCGAGGTGCCAACGGTCCTAGTAAGAGATGAT
GAAGGGCGGGATCTGCTCTG

Product: endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MEACGRRVAAWSQSLASPGKQQVASWSSTTAIDAGATATTATTPPYSKPGPTLMTATKPRPKSILSLDLGKRRIGLAGCD
PLGITVSPLPPLQRKSFDRDLKALQRHCTSRKVEGLVVGLPLDSKGLPTDQARHYERYGQRLARALKLPLALVNEHSSSW
AAAERYNLQGDRSGQLDSAAAALLLEQWLREGPELKPVHVAAHPVSQVNSDSGA

Sequences:

>Translated_214_residues
MEACGRRVAAWSQSLASPGKQQVASWSSTTAIDAGATATTATTPPYSKPGPTLMTATKPRPKSILSLDLGKRRIGLAGCD
PLGITVSPLPPLQRKSFDRDLKALQRHCTSRKVEGLVVGLPLDSKGLPTDQARHYERYGQRLARALKLPLALVNEHSSSW
AAAERYNLQGDRSGQLDSAAAALLLEQWLREGPELKPVHVAAHPVSQVNSDSGA
>Mature_214_residues
MEACGRRVAAWSQSLASPGKQQVASWSSTTAIDAGATATTATTPPYSKPGPTLMTATKPRPKSILSLDLGKRRIGLAGCD
PLGITVSPLPPLQRKSFDRDLKALQRHCTSRKVEGLVVGLPLDSKGLPTDQARHYERYGQRLARALKLPLALVNEHSSSW
AAAERYNLQGDRSGQLDSAAAALLLEQWLREGPELKPVHVAAHPVSQVNSDSGA

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 22889; Mature: 22889

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEACGRRVAAWSQSLASPGKQQVASWSSTTAIDAGATATTATTPPYSKPGPTLMTATKPR
CCCHHHHHHHHHHHHCCCCHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEECCCCC
PKSILSLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFDRDLKALQRHCTSRKVEGLVVGL
CCHHEECCCCCCEECCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
PLDSKGLPTDQARHYERYGQRLARALKLPLALVNEHSSSWAAAERYNLQGDRSGQLDSAA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHH
AALLLEQWLREGPELKPVHVAAHPVSQVNSDSGA
HHHHHHHHHHCCCCCCEEEEECCCHHHCCCCCCC
>Mature Secondary Structure
MEACGRRVAAWSQSLASPGKQQVASWSSTTAIDAGATATTATTPPYSKPGPTLMTATKPR
CCCHHHHHHHHHHHHCCCCHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEECCCCC
PKSILSLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFDRDLKALQRHCTSRKVEGLVVGL
CCHHEECCCCCCEECCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
PLDSKGLPTDQARHYERYGQRLARALKLPLALVNEHSSSWAAAERYNLQGDRSGQLDSAA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHH
AALLLEQWLREGPELKPVHVAAHPVSQVNSDSGA
HHHHHHHHHHCCCCCCEEEEECCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12917642 [H]