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The map label for this gene is 124023188

Identifier: 124023188

GI number: 124023188

Start: 1282832

End: 1283545

Strand: Reverse

Name: 124023188

Synonym: P9303_14841

Alternate gene names: NA

Gene position: 1283545-1282832 (Counterclockwise)

Preceding gene: 124023189

Following gene: 124023187

Centisome position: 47.85

GC content: 48.18

Gene sequence:

>714_bases
ATGAATGAAAAACTCAAACGTCGAAATAAGCAGATCGAAGAACATCTGCAACTCGTTAGGCCAATAGCGCTTCACTACGC
TTTTCGAACTGGACAGGACAAAGAGGATCTCACTCAAGTTGGAATGTTAGGCCTTATCCGAGCGGCACAATTTTTTCAAA
GTAGCAAGTCAGTACCATTTGCTGCCTTTGCAAAACCGCATATACGCGGTGCCATCCTTCACTACCTCAGGGATAGCTTG
GGACCAGTTAAAATACCTAGGCGACTAGAGGAACGAGCTCAGGCACTTCTCAGAGATTCAACCTTGATGGACAGTGCCAG
TTTTATTGAAAAGCTCAGTGCTGTCGATAGGACAGCCATAGAGAGCTACAAGCAGAAAGGACGCTGGTACCCACTCGATC
ATCAGTTCATAACAGCTGATAAAGATCAGTGGAGTGAACTGGTCGACAAAGAACGTAATCGAATGCTTATGAATGCTCTA
GAGAAGCTCGATTGCCAAGAGTTTGCGGTGGTTGATCACGTAGTCCTCAGAGGAGAAAGCCTACGCAGTACAGCCAGTTA
CCTGGGGATCAGCTGCATGACCGTACAAAGACGTGTGAAGCGAGCCCTTCGGCGACTGGCTGTTGATTGCGCTGAGTTGT
CTCCTGACGCTGTTTCCCCTCTCAGGCAGCAGGCTTTTGATCCCTCTGGATCTGTTGCTCCAAGGTCTCTATAG

Upstream 100 bases:

>100_bases
ACGATTCCGTGATTTTACGGTTGTGCTGCAGGGCAATTACATGGATCGCTAGAGGGACAGGCGATCTCTAAACGACCGCT
TTTTACTTCCTATACAAATC

Downstream 100 bases:

>100_bases
CGGCTTTCACTGCAGACAGCCGACGCTCTAGACCATCACGCAGGAAAAGAAGCATTTCAAGCTTCCTATTCTGATAATGA
CGGCGACGGTCTGCCGAGTC

Product: hypothetical protein

Products: NA

Alternate protein names: Type 3 AlteRNAtive RNA Polymerase Sigma Factor; FliA/WhiG Subfamily RNA Polymerase Sigma-28 Factor; Arginine Repressor Domain-Containing Protein; DNA-Directed RNA Polymeracialized Sigma Subunit; FliA/WhiG Subfamily RNA Polymerase Sigma; RNA Polymerase Sigma

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MNEKLKRRNKQIEEHLQLVRPIALHYAFRTGQDKEDLTQVGMLGLIRAAQFFQSSKSVPFAAFAKPHIRGAILHYLRDSL
GPVKIPRRLEERAQALLRDSTLMDSASFIEKLSAVDRTAIESYKQKGRWYPLDHQFITADKDQWSELVDKERNRMLMNAL
EKLDCQEFAVVDHVVLRGESLRSTASYLGISCMTVQRRVKRALRRLAVDCAELSPDAVSPLRQQAFDPSGSVAPRSL

Sequences:

>Translated_237_residues
MNEKLKRRNKQIEEHLQLVRPIALHYAFRTGQDKEDLTQVGMLGLIRAAQFFQSSKSVPFAAFAKPHIRGAILHYLRDSL
GPVKIPRRLEERAQALLRDSTLMDSASFIEKLSAVDRTAIESYKQKGRWYPLDHQFITADKDQWSELVDKERNRMLMNAL
EKLDCQEFAVVDHVVLRGESLRSTASYLGISCMTVQRRVKRALRRLAVDCAELSPDAVSPLRQQAFDPSGSVAPRSL
>Mature_237_residues
MNEKLKRRNKQIEEHLQLVRPIALHYAFRTGQDKEDLTQVGMLGLIRAAQFFQSSKSVPFAAFAKPHIRGAILHYLRDSL
GPVKIPRRLEERAQALLRDSTLMDSASFIEKLSAVDRTAIESYKQKGRWYPLDHQFITADKDQWSELVDKERNRMLMNAL
EKLDCQEFAVVDHVVLRGESLRSTASYLGISCMTVQRRVKRALRRLAVDCAELSPDAVSPLRQQAFDPSGSVAPRSL

Specific function: Unknown

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27047; Mature: 27047

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEKLKRRNKQIEEHLQLVRPIALHYAFRTGQDKEDLTQVGMLGLIRAAQFFQSSKSVPF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH
AAFAKPHIRGAILHYLRDSLGPVKIPRRLEERAQALLRDSTLMDSASFIEKLSAVDRTAI
HHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESYKQKGRWYPLDHQFITADKDQWSELVDKERNRMLMNALEKLDCQEFAVVDHVVLRGES
HHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHH
LRSTASYLGISCMTVQRRVKRALRRLAVDCAELSPDAVSPLRQQAFDPSGSVAPRSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MNEKLKRRNKQIEEHLQLVRPIALHYAFRTGQDKEDLTQVGMLGLIRAAQFFQSSKSVPF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH
AAFAKPHIRGAILHYLRDSLGPVKIPRRLEERAQALLRDSTLMDSASFIEKLSAVDRTAI
HHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESYKQKGRWYPLDHQFITADKDQWSELVDKERNRMLMNALEKLDCQEFAVVDHVVLRGES
HHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHH
LRSTASYLGISCMTVQRRVKRALRRLAVDCAELSPDAVSPLRQQAFDPSGSVAPRSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA