| Definition | Prochlorococcus marinus str. MIT 9303, complete genome. |
|---|---|
| Accession | NC_008820 |
| Length | 2,682,675 |
Click here to switch to the map view.
The map label for this gene is ctpA [H]
Identifier: 124023139
GI number: 124023139
Start: 1229884
End: 1231245
Strand: Direct
Name: ctpA [H]
Synonym: P9303_14351
Alternate gene names: 124023139
Gene position: 1229884-1231245 (Clockwise)
Preceding gene: 124023138
Following gene: 124023157
Centisome position: 45.85
GC content: 45.52
Gene sequence:
>1362_bases ATGCCTATCTCTAGAAGTCTTCGCTCATTAGGCCGCCAGCGCAGTTCATGGCTGCTCCTTCTGGGCGCGGGAGGAGCAGC TACTGCAATTGCACTTGCCTCTCCAAGTTTGGGTCTGCCAAGCAGTTCTTCTTCAGCTATGAGCGATAGCCCCAAAGAGG TGATTGATCAGGTCTGGCAGATTGTATATCGTGACTATCTTGATTCCACAGGTCAATATAACCCTGAAGACTGGAAGGGA CTACGCAAGGACTTATTAGCCAAGAACTATTCAGCCACTTCAGAATCATATGAAGCGATCCGTGGCATGTTAGCGAGCTT GGATGATCCTTATACACGATTCTTAGATCCAAAGGAATTTAAGGAAATGCAGATCGACACCTCAGGAGAATTAACAGGTG TTGGCATCCAGCTTTCTCTAGACAAGGATACAAAAGAATTAGTTGTGGTTTCACCAATCGAAGGAACTCCTGCCTCTAAG GCTGGAGTCCAGCCTAAGGATGTGATCGTTTTCATTAATGGACAATCCACTAAGGGCATGTCTACAGCGGATGCTGTTAA GTTGATTCGTGGTAAAGAAGGTAGTGAGGTCACCCTTGGTTTGCGTCGCAAGGGTGACGTTATCCAGGTCCCGTTGATAC GTGCACGGATTGAGATACAGGCAGTAGATATACAGTTAAATACGACAGTTGATGGTACAAAGATTGGTTATATCCGCCTC AAACAGTTTAATGCCCATGCAGCTAAAGGTATGCGAAGTGCTATCAAGAATTTAGAAAAAGATGGTGTTCAAGGCTATGT ACTCGACTTGCGTAGTAATCCTGGAGGGTTGCTTGAGGCCAGTGTTGATATCGCACGCCAATGGCTTGATGAAGGTACAA TTGTTCGAACAAAAACTCGTGATGGCATTCAAGATGTACGCCGAGCGAATGGTAGTGCCTTAACCAAACTACCTGTTGTG GTTTTGGTGAATGAAGGCTCAGCAAGTGCAAGTGAGATCCTCTCAGGAGCACTACAGGACAATGATCGTGGTGTACTTGT AGGACAGAAGACCTTTGGCAAGGGCTTGGTTCAATCTGTTCGAGGTCTTTCTGACGGCTCTGGTCTTACTGTCACGATTG CTAAGTATCTCACCCCAAGCGGAACGGACATTCATAAAAATGGCATCAAGCCAGACATTAAGGCCGTGATGTCCGAAAAA GAAATCAATAATCTTAAGCTTGAGGATCTTGGGTCTGGGAAGGATAGTCAATATAAGGTGGCCGAAACAACACTAATTAA AGCCCTTAAAAAAGTACTTGATGGGCCATCTTATAAGCCTGTGGGAATTAACCTTCCCCAGGCTATTCCGTCAACACTAT AA
Upstream 100 bases:
>100_bases GAGGGTGTAGATGCGTTGATCCAGTTGATCAAGGACGACGGTCGATGGGTGGATCCGCCATGAAGTCGTTATTGTGTGAG ATCAGTCCAATTTGGACGCC
Downstream 100 bases:
>100_bases TTTCTAAGCAGTTAGATTTTGTATTAAATAATGATTGACTTATGATCTTGCAGGATGTGATGAGCACATGATAATTACTT CCTGTTTAATCTCTATCTCT
Product: carboxyl-terminal processing protease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 453; Mature: 452
Protein sequence:
>453_residues MPISRSLRSLGRQRSSWLLLLGAGGAATAIALASPSLGLPSSSSSAMSDSPKEVIDQVWQIVYRDYLDSTGQYNPEDWKG LRKDLLAKNYSATSESYEAIRGMLASLDDPYTRFLDPKEFKEMQIDTSGELTGVGIQLSLDKDTKELVVVSPIEGTPASK AGVQPKDVIVFINGQSTKGMSTADAVKLIRGKEGSEVTLGLRRKGDVIQVPLIRARIEIQAVDIQLNTTVDGTKIGYIRL KQFNAHAAKGMRSAIKNLEKDGVQGYVLDLRSNPGGLLEASVDIARQWLDEGTIVRTKTRDGIQDVRRANGSALTKLPVV VLVNEGSASASEILSGALQDNDRGVLVGQKTFGKGLVQSVRGLSDGSGLTVTIAKYLTPSGTDIHKNGIKPDIKAVMSEK EINNLKLEDLGSGKDSQYKVAETTLIKALKKVLDGPSYKPVGINLPQAIPSTL
Sequences:
>Translated_453_residues MPISRSLRSLGRQRSSWLLLLGAGGAATAIALASPSLGLPSSSSSAMSDSPKEVIDQVWQIVYRDYLDSTGQYNPEDWKG LRKDLLAKNYSATSESYEAIRGMLASLDDPYTRFLDPKEFKEMQIDTSGELTGVGIQLSLDKDTKELVVVSPIEGTPASK AGVQPKDVIVFINGQSTKGMSTADAVKLIRGKEGSEVTLGLRRKGDVIQVPLIRARIEIQAVDIQLNTTVDGTKIGYIRL KQFNAHAAKGMRSAIKNLEKDGVQGYVLDLRSNPGGLLEASVDIARQWLDEGTIVRTKTRDGIQDVRRANGSALTKLPVV VLVNEGSASASEILSGALQDNDRGVLVGQKTFGKGLVQSVRGLSDGSGLTVTIAKYLTPSGTDIHKNGIKPDIKAVMSEK EINNLKLEDLGSGKDSQYKVAETTLIKALKKVLDGPSYKPVGINLPQAIPSTL >Mature_452_residues PISRSLRSLGRQRSSWLLLLGAGGAATAIALASPSLGLPSSSSSAMSDSPKEVIDQVWQIVYRDYLDSTGQYNPEDWKGL RKDLLAKNYSATSESYEAIRGMLASLDDPYTRFLDPKEFKEMQIDTSGELTGVGIQLSLDKDTKELVVVSPIEGTPASKA GVQPKDVIVFINGQSTKGMSTADAVKLIRGKEGSEVTLGLRRKGDVIQVPLIRARIEIQAVDIQLNTTVDGTKIGYIRLK QFNAHAAKGMRSAIKNLEKDGVQGYVLDLRSNPGGLLEASVDIARQWLDEGTIVRTKTRDGIQDVRRANGSALTKLPVVV LVNEGSASASEILSGALQDNDRGVLVGQKTFGKGLVQSVRGLSDGSGLTVTIAKYLTPSGTDIHKNGIKPDIKAVMSEKE INNLKLEDLGSGKDSQYKVAETTLIKALKKVLDGPSYKPVGINLPQAIPSTL
Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]
COG id: COG0793
COG function: function code M; Periplasmic protease
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
Organism=Escherichia coli, GI1788134, Length=310, Percent_Identity=32.5806451612903, Blast_Score=130, Evalue=1e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR005151 - InterPro: IPR004447 [H]
Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]
EC number: =3.4.21.102 [H]
Molecular weight: Translated: 48615; Mature: 48484
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPISRSLRSLGRQRSSWLLLLGAGGAATAIALASPSLGLPSSSSSAMSDSPKEVIDQVWQ CCCHHHHHHHHCCCCCEEEEEECCCHHEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH IVYRDYLDSTGQYNPEDWKGLRKDLLAKNYSATSESYEAIRGMLASLDDPYTRFLDPKEF HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHCCCHHHH KEMQIDTSGELTGVGIQLSLDKDTKELVVVSPIEGTPASKAGVQPKDVIVFINGQSTKGM HHEECCCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCC STADAVKLIRGKEGSEVTLGLRRKGDVIQVPLIRARIEIQAVDIQLNTTVDGTKIGYIRL CHHHHHHHHCCCCCCEEEEEECCCCCEEEECEEEEEEEEEEEEEEEECCCCCCEEEEEEE KQFNAHAAKGMRSAIKNLEKDGVQGYVLDLRSNPGGLLEASVDIARQWLDEGTIVRTKTR EECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEHHHHHHHHHHCCCCEEEECCH DGIQDVRRANGSALTKLPVVVLVNEGSASASEILSGALQDNDRGVLVGQKTFGKGLVQSV HHHHHHHHCCCCEEEECEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHH RGLSDGSGLTVTIAKYLTPSGTDIHKNGIKPDIKAVMSEKEINNLKLEDLGSGKDSQYKV HCCCCCCCEEEEEEEHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCEEH AETTLIKALKKVLDGPSYKPVGINLPQAIPSTL HHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCC >Mature Secondary Structure PISRSLRSLGRQRSSWLLLLGAGGAATAIALASPSLGLPSSSSSAMSDSPKEVIDQVWQ CCHHHHHHHHCCCCCEEEEEECCCHHEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH IVYRDYLDSTGQYNPEDWKGLRKDLLAKNYSATSESYEAIRGMLASLDDPYTRFLDPKEF HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHCCCHHHH KEMQIDTSGELTGVGIQLSLDKDTKELVVVSPIEGTPASKAGVQPKDVIVFINGQSTKGM HHEECCCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCC STADAVKLIRGKEGSEVTLGLRRKGDVIQVPLIRARIEIQAVDIQLNTTVDGTKIGYIRL CHHHHHHHHCCCCCCEEEEEECCCCCEEEECEEEEEEEEEEEEEEEECCCCCCEEEEEEE KQFNAHAAKGMRSAIKNLEKDGVQGYVLDLRSNPGGLLEASVDIARQWLDEGTIVRTKTR EECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEHHHHHHHHHHCCCCEEEECCH DGIQDVRRANGSALTKLPVVVLVNEGSASASEILSGALQDNDRGVLVGQKTFGKGLVQSV HHHHHHHHCCCCEEEECEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHH RGLSDGSGLTVTIAKYLTPSGTDIHKNGIKPDIKAVMSEKEINNLKLEDLGSGKDSQYKV HCCCCCCCEEEEEEEHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCEEH AETTLIKALKKVLDGPSYKPVGINLPQAIPSTL HHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8034700; 8058761; 8590279; 8905231 [H]