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The map label for this gene is alkB

Identifier: 124023019

GI number: 124023019

Start: 1118054

End: 1118659

Strand: Reverse

Name: alkB

Synonym: P9303_13141

Alternate gene names: NA

Gene position: 1118659-1118054 (Counterclockwise)

Preceding gene: 124023022

Following gene: 124023018

Centisome position: 41.7

GC content: 51.16

Gene sequence:

>606_bases
ATGGCACAGCCATCACAAAGACACGGTTGGGCAGAAGCTCGCCCTTGGACGTGGATGGTCAATTGGTTGAACTGCGCTGA
TGCTCGATCCTGGCTGCATCGACTACAAGACGGTGTGGCTTGGGATCAACCGGTTGTTCGAGTCTACGGACGTCATCACG
TTGTCCCACGACTAACGGCCTTCATGGCAGCTGAGGGGGTGAACTATCACTACAGCGGTGTAAGCCATCGCGGCGAAGGA
TTGCCTGATTGGCTCTATCCCTTGCTCAGGCGAGTGAATGCGGCCTGCAAGGAAAACTTCAACGGTTGTTTACTGAATCT
CTATCGCAATGGCAACGACAGCATGGGTTGGCATGCGGATGATGAAGCTGAGATTGAACCAAACACACAGATCGCTTCCT
TGTCACTGGGAGCAACAAGGGATTTCTGTTTAAAGCATCGCCATCAACCGTTGCGGGAAGTGCTTCATTTGCAGGGTGGC
GATCTGTTGATCATGCACCCTCAATGTCAAAAAGAATGGCTACATGCATTGCCGAGACGAAAGAGAGTGCTTCAACCAAG
AATCAACCTGACCTTCCGTTGCTTTATCAAAAGCCAAGGTCTATAG

Upstream 100 bases:

>100_bases
CGGAGTGTTTCAGCTATGACTCAACACTGGCATCTGTGACTACTCTCCGCCATCTATAAAGCCAACATGGTTCTGTTCAA
TAATGTTGGCTAGGAGCTCT

Downstream 100 bases:

>100_bases
CTCATCAGAATGCTTATGGGTGTTCTATTCTATTTGACAACCAAATCGGATGGAAATAAATAATATCGATTGCCATGGGC
TTGGAATTTTCACCGCAATC

Product: alkylated DNA repair protein

Products: NA

Alternate protein names: 2OG-Fe(II) Oxygenase; DNA-N1-Methyladenine Dioxygenase; DNA Repair System Specific For Alkylated DNA; 2OG-Fe(II) Oxygenase Superfamily Protein; 2OG-Fe(II) Oxygenase Family Oxidoreductase; Oxidoreductase 2OG-Fe(II) Oxygenase Family; Alkylated DNA Repair Protein-Like Protein; Oxidoreductase 2OG-Fe(II) Oxygenase Family Protein; Alkylated DNA Repair Protein AlkB; CRISPR-Associated Family Protein; DNA Repair System Specific For Alkylated DNA Protein; 2OG-Fe(II) Oxygenase Family Protein; DNA Repair System Protein

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MAQPSQRHGWAEARPWTWMVNWLNCADARSWLHRLQDGVAWDQPVVRVYGRHHVVPRLTAFMAAEGVNYHYSGVSHRGEG
LPDWLYPLLRRVNAACKENFNGCLLNLYRNGNDSMGWHADDEAEIEPNTQIASLSLGATRDFCLKHRHQPLREVLHLQGG
DLLIMHPQCQKEWLHALPRRKRVLQPRINLTFRCFIKSQGL

Sequences:

>Translated_201_residues
MAQPSQRHGWAEARPWTWMVNWLNCADARSWLHRLQDGVAWDQPVVRVYGRHHVVPRLTAFMAAEGVNYHYSGVSHRGEG
LPDWLYPLLRRVNAACKENFNGCLLNLYRNGNDSMGWHADDEAEIEPNTQIASLSLGATRDFCLKHRHQPLREVLHLQGG
DLLIMHPQCQKEWLHALPRRKRVLQPRINLTFRCFIKSQGL
>Mature_200_residues
AQPSQRHGWAEARPWTWMVNWLNCADARSWLHRLQDGVAWDQPVVRVYGRHHVVPRLTAFMAAEGVNYHYSGVSHRGEGL
PDWLYPLLRRVNAACKENFNGCLLNLYRNGNDSMGWHADDEAEIEPNTQIASLSLGATRDFCLKHRHQPLREVLHLQGGD
LLIMHPQCQKEWLHALPRRKRVLQPRINLTFRCFIKSQGL

Specific function: Unknown

COG id: COG3145

COG function: function code L; Alkylated DNA repair protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI224451107, Length=213, Percent_Identity=36.150234741784, Blast_Score=115, Evalue=3e-26,
Organism=Homo sapiens, GI48717226, Length=213, Percent_Identity=36.150234741784, Blast_Score=115, Evalue=3e-26,
Organism=Homo sapiens, GI224451103, Length=213, Percent_Identity=36.150234741784, Blast_Score=115, Evalue=3e-26,
Organism=Homo sapiens, GI21040275, Length=190, Percent_Identity=35.7894736842105, Blast_Score=92, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23315; Mature: 23184

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQPSQRHGWAEARPWTWMVNWLNCADARSWLHRLQDGVAWDQPVVRVYGRHHVVPRLTA
CCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHH
FMAAEGVNYHYSGVSHRGEGLPDWLYPLLRRVNAACKENFNGCLLNLYRNGNDSMGWHAD
HHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCC
DEAEIEPNTQIASLSLGATRDFCLKHRHQPLREVLHLQGGDLLIMHPQCQKEWLHALPRR
CCCCCCCCCEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH
KRVLQPRINLTFRCFIKSQGL
HHHCCCCCCEEEEEEEECCCC
>Mature Secondary Structure 
AQPSQRHGWAEARPWTWMVNWLNCADARSWLHRLQDGVAWDQPVVRVYGRHHVVPRLTA
CCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHH
FMAAEGVNYHYSGVSHRGEGLPDWLYPLLRRVNAACKENFNGCLLNLYRNGNDSMGWHAD
HHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCC
DEAEIEPNTQIASLSLGATRDFCLKHRHQPLREVLHLQGGDLLIMHPQCQKEWLHALPRR
CCCCCCCCCEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH
KRVLQPRINLTFRCFIKSQGL
HHHCCCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA