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The map label for this gene is ygaF [H]

Identifier: 124022787

GI number: 124022787

Start: 966228

End: 966749

Strand: Reverse

Name: ygaF [H]

Synonym: P9303_10801

Alternate gene names: 124022787

Gene position: 966749-966228 (Counterclockwise)

Preceding gene: 124022789

Following gene: 124022786

Centisome position: 36.04

GC content: 53.26

Gene sequence:

>522_bases
GTGTTGAGTATCAGCCAATGTCTTGGGCGCCCAAGCCAAGCCTTGGCCATGGAAGGAAAGCTTCCTGCTCTAGACGCTCA
AGCCCCAGACTTTGAGCTAGAGGCCGCTGCTCAAGAAGGTGCGCTGGCTGAGAAATTACAACGTGATGCCTTTCTAGGCA
GTTGGCTGGTTCTTTACTTCTACCCTCGCGACTTCACCAGTGGCTGCACACTCGAGGCGCGTGGATTCCAGCGAGATCTC
TCAGACTTTAAAGCTGCAGGTGCGGCTGTGGTAGGAGTCAGCGCTGATGGCACCGAAGAGCACGTGAGCTTCTGTAGCAG
CGAAGGCCTTGGATACACACTGTTGTCTGACCCAGGTGGAGTCGTAAGCGAAAGGTATGGATCATGGAGTTCACCATTCA
GCCAACGTCACACATTTCTGATTGATCCCAAAGGAATCCTACGCATGCGTTGGTTGGCTGTCAGTCCATCACGCCATAGC
CAAGATGTGCTGCGAGAGTTGAAGGAACTTCAGCAGTCATAA

Upstream 100 bases:

>100_bases
CATTAGCTCCGCCGCGCAGTTGTTCTGACTAATCTCTTCTGCAGTTGGCTTGATACCGGTGAAACGATCTGAACTCTTGA
GAGTCATAACAGGGGCGGTA

Downstream 100 bases:

>100_bases
ATGAATCGCGAGAGAAAGAGACCATCTACCTTTTGCCCAAACGGCGAAAAACTTATCGCAAACAGGCAAAGTAATAGCGC
AAATATCTTGAAATTACCTG

Product: Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergens family protein

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MLSISQCLGRPSQALAMEGKLPALDAQAPDFELEAAAQEGALAEKLQRDAFLGSWLVLYFYPRDFTSGCTLEARGFQRDL
SDFKAAGAAVVGVSADGTEEHVSFCSSEGLGYTLLSDPGGVVSERYGSWSSPFSQRHTFLIDPKGILRMRWLAVSPSRHS
QDVLRELKELQQS

Sequences:

>Translated_173_residues
MLSISQCLGRPSQALAMEGKLPALDAQAPDFELEAAAQEGALAEKLQRDAFLGSWLVLYFYPRDFTSGCTLEARGFQRDL
SDFKAAGAAVVGVSADGTEEHVSFCSSEGLGYTLLSDPGGVVSERYGSWSSPFSQRHTFLIDPKGILRMRWLAVSPSRHS
QDVLRELKELQQS
>Mature_173_residues
MLSISQCLGRPSQALAMEGKLPALDAQAPDFELEAAAQEGALAEKLQRDAFLGSWLVLYFYPRDFTSGCTLEARGFQRDL
SDFKAAGAAVVGVSADGTEEHVSFCSSEGLGYTLLSDPGGVVSERYGSWSSPFSQRHTFLIDPKGILRMRWLAVSPSRHS
QDVLRELKELQQS

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI5802974, Length=160, Percent_Identity=33.125, Blast_Score=70, Evalue=9e-13,
Organism=Homo sapiens, GI32189392, Length=156, Percent_Identity=34.6153846153846, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI32483377, Length=156, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI1788825, Length=150, Percent_Identity=34.6666666666667, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI1786822, Length=143, Percent_Identity=28.6713286713287, Blast_Score=63, Evalue=9e-12,
Organism=Drosophila melanogaster, GI17738015, Length=154, Percent_Identity=36.3636363636364, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24656348, Length=161, Percent_Identity=32.2981366459627, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI17864676, Length=161, Percent_Identity=32.2981366459627, Blast_Score=70, Evalue=9e-13,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 18889; Mature: 18889

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSISQCLGRPSQALAMEGKLPALDAQAPDFELEAAAQEGALAEKLQRDAFLGSWLVLYF
CCCHHHHHCCCCHHEEECCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCEEEEEE
YPRDFTSGCTLEARGFQRDLSDFKAAGAAVVGVSADGTEEHVSFCSSEGLGYTLLSDPGG
ECCCCCCCCEEECCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCEEEECCCCC
VVSERYGSWSSPFSQRHTFLIDPKGILRMRWLAVSPSRHSQDVLRELKELQQS
HHHHHCCCCCCCHHHCCEEEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MLSISQCLGRPSQALAMEGKLPALDAQAPDFELEAAAQEGALAEKLQRDAFLGSWLVLYF
CCCHHHHHCCCCHHEEECCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCEEEEEE
YPRDFTSGCTLEARGFQRDLSDFKAAGAAVVGVSADGTEEHVSFCSSEGLGYTLLSDPGG
ECCCCCCCCEEECCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCEEEECCCCC
VVSERYGSWSSPFSQRHTFLIDPKGILRMRWLAVSPSRHSQDVLRELKELQQS
HHHHHCCCCCCCHHHCCEEEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]