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The map label for this gene is gid

Identifier: 124022709

GI number: 124022709

Start: 916895

End: 918298

Strand: Reverse

Name: gid

Synonym: P9303_10021

Alternate gene names: 124022709

Gene position: 918298-916895 (Counterclockwise)

Preceding gene: 124022710

Following gene: 124022708

Centisome position: 34.23

GC content: 54.7

Gene sequence:

>1404_bases
TTGAGTTCCCTCCCTACTGTGCTTGTCATAGGAGCCGGCCTGGCTGGTTCAGAAGCCGCTTGGCAAATAGCACAAGCAGG
CGTGCCTGTCAGGCTGATAGAGATGCGGCCGATCAAGCAGTCACCAGCTCACTACAGCAGTGAATTCGCAGAGCTGGTCT
GCAGTAATAGCTTTGGCGCTCTGAGTAGCGATCGTGCTGCCGGCCTACTCAAGGAAGAGCTGCGCCGGCTGGGCTCAATC
GTGATCCGCACCGCCGACAGCCACGCCGTACCTGCTGGTGGTGCACTAGCTGTCAATAGGGCTTCCTTCAGTGCATCCCT
TACCAAAGAACTCTCTGCCCATCCACTAATCACGATCGAGCGCCACGAGCAAGAACACCTTCCAGGGGAAGGACAAATCA
CTGTGCTAGCAACGGGTCCTCTGACCAGTGAATTGCTTGCAGAAAACCTACGCACCTTCACCGGCCGTAGCGAATGCCAC
TTCTTTGATGCCGCCAGTCCAATTATCGAAGGCGAAAGTATCGATCTCACGCTGGCATTTCGGGCAAGCCGCTACGACAA
AGGTGACGCTGACTACATGAATTGCCCGATGGACAAAGGGCAATACCTTGCCTTTCGGGAGGCACTGCTCAATGCTGAGC
AAGCCGAGCTCAAAGAGTTCGATAAAGAATCTGCCAAGTTTTTCGAGGGCTGCCTACCAATCGAAGAGCTTGCTCGTCGC
GGCGAAGACACAATGCGCTACGGCCCACTCAAACCAATCGGACTCTGGGATCCCCGTTGGGGCGATCTCAATGATCGAGA
CGTGCGTCGCTCCAAGCGGGCTTATGCAGTTGTTCAACTGCGCAAAGAAGATCACGAAGGTCGTCTCTGGAATCTGGTGG
GCTTTCAAACCAATCTCAAATGGAGCGAACAAAAGCGAGTCCTAAAAATGATTCCAGGCCTGCACCAGGCTGAATTCGTG
CGTTTTGGGGTCATGCACCGCAATACCTTTCTCGAAGCCCCGCAGCTACTTGAACCAACCCTGCAGTTCAGCAAACGATC
CAACCTCCTCGCTGCTGGACAGATCACCGGCACAGAGGGTTATACCGCTGCTGTAGCTGGTGGCTGGCTTGCTGGAAGCA
ATGCAGCGAGATTGGCAATGGGTCTGAACACCATTACGCTCCCTTCTACAACAATGATCGGTGCCCTTACACACTTTGTG
AGCGACAGCGACTGCTTTAGGGACCGCAAAGGTGAGTTCCAGCCGATGCCCGCAAATTTCGGCCTTCTGCCAGAACTTGC
CGAGCGAATCCACGCTAAACGCGAACGCTACGGTGCTTACCGAGATAGGGCGCTCACGATGCTTGAGGAAGCCCAGCAAC
AATGGGGTATGAGTAAGGCCCCTGTCCAGATAGGGAGTTCATAA

Upstream 100 bases:

>100_bases
GGCTTGTCAGCAAAAACAAAGGCTAAAAATCTGCAGTGGCCATCCCCAATGGCCACTGCCTAAGCTCGAGTTCAGGCCAA
ATGCCGAATGACCTGAACTC

Downstream 100 bases:

>100_bases
TCGTCTCGAACAGGGCAAGCATCAAACTGATTCATTAATCTCTCCAGCAAAGCTGCCGCAAACTTCACAGTCAGAGTTGA
CGGGTTCAGAGTTGCATGCA

Product: tRNA (uracil-5-)-methyltransferase Gid

Products: NA

Alternate protein names: Folate-dependent tRNA (uracil-5-)-methyltransferase; Folate-dependent tRNA(M-5-U54)-methyltransferase

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MSSLPTVLVIGAGLAGSEAAWQIAQAGVPVRLIEMRPIKQSPAHYSSEFAELVCSNSFGALSSDRAAGLLKEELRRLGSI
VIRTADSHAVPAGGALAVNRASFSASLTKELSAHPLITIERHEQEHLPGEGQITVLATGPLTSELLAENLRTFTGRSECH
FFDAASPIIEGESIDLTLAFRASRYDKGDADYMNCPMDKGQYLAFREALLNAEQAELKEFDKESAKFFEGCLPIEELARR
GEDTMRYGPLKPIGLWDPRWGDLNDRDVRRSKRAYAVVQLRKEDHEGRLWNLVGFQTNLKWSEQKRVLKMIPGLHQAEFV
RFGVMHRNTFLEAPQLLEPTLQFSKRSNLLAAGQITGTEGYTAAVAGGWLAGSNAARLAMGLNTITLPSTTMIGALTHFV
SDSDCFRDRKGEFQPMPANFGLLPELAERIHAKRERYGAYRDRALTMLEEAQQQWGMSKAPVQIGSS

Sequences:

>Translated_467_residues
MSSLPTVLVIGAGLAGSEAAWQIAQAGVPVRLIEMRPIKQSPAHYSSEFAELVCSNSFGALSSDRAAGLLKEELRRLGSI
VIRTADSHAVPAGGALAVNRASFSASLTKELSAHPLITIERHEQEHLPGEGQITVLATGPLTSELLAENLRTFTGRSECH
FFDAASPIIEGESIDLTLAFRASRYDKGDADYMNCPMDKGQYLAFREALLNAEQAELKEFDKESAKFFEGCLPIEELARR
GEDTMRYGPLKPIGLWDPRWGDLNDRDVRRSKRAYAVVQLRKEDHEGRLWNLVGFQTNLKWSEQKRVLKMIPGLHQAEFV
RFGVMHRNTFLEAPQLLEPTLQFSKRSNLLAAGQITGTEGYTAAVAGGWLAGSNAARLAMGLNTITLPSTTMIGALTHFV
SDSDCFRDRKGEFQPMPANFGLLPELAERIHAKRERYGAYRDRALTMLEEAQQQWGMSKAPVQIGSS
>Mature_466_residues
SSLPTVLVIGAGLAGSEAAWQIAQAGVPVRLIEMRPIKQSPAHYSSEFAELVCSNSFGALSSDRAAGLLKEELRRLGSIV
IRTADSHAVPAGGALAVNRASFSASLTKELSAHPLITIERHEQEHLPGEGQITVLATGPLTSELLAENLRTFTGRSECHF
FDAASPIIEGESIDLTLAFRASRYDKGDADYMNCPMDKGQYLAFREALLNAEQAELKEFDKESAKFFEGCLPIEELARRG
EDTMRYGPLKPIGLWDPRWGDLNDRDVRRSKRAYAVVQLRKEDHEGRLWNLVGFQTNLKWSEQKRVLKMIPGLHQAEFVR
FGVMHRNTFLEAPQLLEPTLQFSKRSNLLAAGQITGTEGYTAAVAGGWLAGSNAARLAMGLNTITLPSTTMIGALTHFVS
DSDCFRDRKGEFQPMPANFGLLPELAERIHAKRERYGAYRDRALTMLEEAQQQWGMSKAPVQIGSS

Specific function: Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs

COG id: COG1206

COG function: function code J; NAD(FAD)-utilizing enzyme possibly involved in translation

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MnmG family. TrmFO subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRMFO_PROM3 (A2C8E1)

Other databases:

- EMBL:   CP000554
- RefSeq:   YP_001017016.1
- ProteinModelPortal:   A2C8E1
- SMR:   A2C8E1
- STRING:   A2C8E1
- GeneID:   4779041
- GenomeReviews:   CP000554_GR
- KEGG:   pmf:P9303_10021
- eggNOG:   COG1206
- HOGENOM:   HBG285041
- OMA:   FEGCLPI
- ProtClustDB:   PRK05335
- GO:   GO:0005737
- HAMAP:   MF_01037
- InterPro:   IPR004417
- InterPro:   IPR002218
- TIGRFAMs:   TIGR00137

Pfam domain/function: PF01134 GIDA

EC number: =2.1.1.74

Molecular weight: Translated: 51532; Mature: 51401

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS01280 GIDA_1; PS01281 GIDA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLPTVLVIGAGLAGSEAAWQIAQAGVPVRLIEMRPIKQSPAHYSSEFAELVCSNSFGA
CCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCC
LSSDRAAGLLKEELRRLGSIVIRTADSHAVPAGGALAVNRASFSASLTKELSAHPLITIE
CCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHCCCCEEEEE
RHEQEHLPGEGQITVLATGPLTSELLAENLRTFTGRSECHFFDAASPIIEGESIDLTLAF
CCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEEE
RASRYDKGDADYMNCPMDKGQYLAFREALLNAEQAELKEFDKESAKFFEGCLPIEELARR
EECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHC
GEDTMRYGPLKPIGLWDPRWGDLNDRDVRRSKRAYAVVQLRKEDHEGRLWNLVGFQTNLK
CCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCCCEEEEEEEECCCC
WSEQKRVLKMIPGLHQAEFVRFGVMHRNTFLEAPQLLEPTLQFSKRSNLLAAGQITGTEG
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECEEECCCC
YTAAVAGGWLAGSNAARLAMGLNTITLPSTTMIGALTHFVSDSDCFRDRKGEFQPMPANF
CEEEEECCEEECCCCCEEEECCCEEECCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCC
GLLPELAERIHAKRERYGAYRDRALTMLEEAQQQWGMSKAPVQIGSS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCC
>Mature Secondary Structure 
SSLPTVLVIGAGLAGSEAAWQIAQAGVPVRLIEMRPIKQSPAHYSSEFAELVCSNSFGA
CCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCC
LSSDRAAGLLKEELRRLGSIVIRTADSHAVPAGGALAVNRASFSASLTKELSAHPLITIE
CCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHCCCCEEEEE
RHEQEHLPGEGQITVLATGPLTSELLAENLRTFTGRSECHFFDAASPIIEGESIDLTLAF
CCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEEE
RASRYDKGDADYMNCPMDKGQYLAFREALLNAEQAELKEFDKESAKFFEGCLPIEELARR
EECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHC
GEDTMRYGPLKPIGLWDPRWGDLNDRDVRRSKRAYAVVQLRKEDHEGRLWNLVGFQTNLK
CCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCCCEEEEEEEECCCC
WSEQKRVLKMIPGLHQAEFVRFGVMHRNTFLEAPQLLEPTLQFSKRSNLLAAGQITGTEG
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECEEECCCC
YTAAVAGGWLAGSNAARLAMGLNTITLPSTTMIGALTHFVSDSDCFRDRKGEFQPMPANF
CEEEEECCEEECCCCCEEEECCCEEECCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCC
GLLPELAERIHAKRERYGAYRDRALTMLEEAQQQWGMSKAPVQIGSS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA