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The map label for this gene is csgA [H]

Identifier: 124022468

GI number: 124022468

Start: 699121

End: 699786

Strand: Direct

Name: csgA [H]

Synonym: P9303_07591

Alternate gene names: 124022468

Gene position: 699121-699786 (Clockwise)

Preceding gene: 124022467

Following gene: 124022475

Centisome position: 26.06

GC content: 50.15

Gene sequence:

>666_bases
TTGGCGACCTATCTGATCACAGGAACGAATCGCGGCATTGGCTATGAATATTGTCGTCAGCTTCATGCACGTGGTGACGT
GGTTGTGGCTGCATGCCGTAAGCCTTCGCCGCAATTGGAAGGCTTAGGCGTGCGTATTGAGGCCGGGGTAGAGATCACTT
CAGATGGATCGATTGCGCGCTTGAAGGAACGGCTTCGCAGCTTGCCGATAGATGTGCTGATCCACAATGCCGGCATTTTG
GAAAGCACAAATTTGAAAGATTTTGATCCCGAGAGCGTTCGTCGTCAGTTCGAGGTCAACGCCATTGGGCCATTACGTGT
CACACATGCTCTTTTGGATCATCTACTTCCTGGAGCCAAAGTTATTTTGATGACTAGCCGAATGGGCTCGATCGATGACA
ACAGTTCCGGCGGTTCTTATGGCTACAGGATGTCGAAGGTGGCTTTGTGTATGGCAGGAAAGTCATTAGCTATCGACCTT
AAATCTCAAGGCATTGCCGTGGCGCTTCTTCATCCAGGGCTTGTGCGTACCCGCATGACAGGATTCACTGCTCAAGGCAT
CACTCCAGAAGAGTCGGTTGATGGCTTGTTGGCCCGTATTGACAATCTCAATTTGGAAAACTCAGGCACTTTTTGGCATG
CCAATGGGGAGATTCTTCCTTGGTAA

Upstream 100 bases:

>100_bases
AGATCAGGGTTGGCAATCCAGCCAATCCAACTGGCATGCGTGCAAAGATCCCCTCTCGCTATAAAGTTATTTTCTAAATA
GGCTTCTGCTTTCTCTGCTC

Downstream 100 bases:

>100_bases
CAATTGGTTTGGGAAGGAAGTGATTGACGTTGCTGATTGCCTATAAATTTCTGTTCTTCTTAATCATTCTTGAGCGCTTC
ACCCCTCACGCTGAAATTCA

Product: Short-chain dehydrogenase/reductase (SDR) superfamily protein

Products: NA

Alternate protein names: C signal [H]

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MATYLITGTNRGIGYEYCRQLHARGDVVVAACRKPSPQLEGLGVRIEAGVEITSDGSIARLKERLRSLPIDVLIHNAGIL
ESTNLKDFDPESVRRQFEVNAIGPLRVTHALLDHLLPGAKVILMTSRMGSIDDNSSGGSYGYRMSKVALCMAGKSLAIDL
KSQGIAVALLHPGLVRTRMTGFTAQGITPEESVDGLLARIDNLNLENSGTFWHANGEILPW

Sequences:

>Translated_221_residues
MATYLITGTNRGIGYEYCRQLHARGDVVVAACRKPSPQLEGLGVRIEAGVEITSDGSIARLKERLRSLPIDVLIHNAGIL
ESTNLKDFDPESVRRQFEVNAIGPLRVTHALLDHLLPGAKVILMTSRMGSIDDNSSGGSYGYRMSKVALCMAGKSLAIDL
KSQGIAVALLHPGLVRTRMTGFTAQGITPEESVDGLLARIDNLNLENSGTFWHANGEILPW
>Mature_220_residues
ATYLITGTNRGIGYEYCRQLHARGDVVVAACRKPSPQLEGLGVRIEAGVEITSDGSIARLKERLRSLPIDVLIHNAGILE
STNLKDFDPESVRRQFEVNAIGPLRVTHALLDHLLPGAKVILMTSRMGSIDDNSSGGSYGYRMSKVALCMAGKSLAIDLK
SQGIAVALLHPGLVRTRMTGFTAQGITPEESVDGLLARIDNLNLENSGTFWHANGEILPW

Specific function: Cell-cell signaling protein required for fruiting body morphogenesis. Necessary for cellular aggregation, for spore differentiation, and for gene expression that is initiated after 6 hour of starvation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YKL071W [H]

Homologues:

Organism=Escherichia coli, GI1786701, Length=185, Percent_Identity=32.972972972973, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI87082100, Length=201, Percent_Identity=29.3532338308458, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1787335, Length=188, Percent_Identity=28.7234042553192, Blast_Score=64, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17558996, Length=248, Percent_Identity=29.8387096774194, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17558990, Length=252, Percent_Identity=26.1904761904762, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17558992, Length=242, Percent_Identity=29.3388429752066, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17558994, Length=243, Percent_Identity=28.8065843621399, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17559964, Length=245, Percent_Identity=28.9795918367347, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17559962, Length=250, Percent_Identity=30.8, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI72001658, Length=243, Percent_Identity=28.8065843621399, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17558006, Length=202, Percent_Identity=29.2079207920792, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193207563, Length=242, Percent_Identity=25.6198347107438, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17542178, Length=239, Percent_Identity=31.7991631799163, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17541382, Length=254, Percent_Identity=30.3149606299213, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17532177, Length=239, Percent_Identity=28.4518828451883, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322779, Length=245, Percent_Identity=29.3877551020408, Blast_Score=83, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24640547, Length=249, Percent_Identity=29.718875502008, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24643142, Length=180, Percent_Identity=32.7777777777778, Blast_Score=71, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 23920; Mature: 23789

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATYLITGTNRGIGYEYCRQLHARGDVVVAACRKPSPQLEGLGVRIEAGVEITSDGSIAR
CEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCEEEECCCCHHH
LKERLRSLPIDVLIHNAGILESTNLKDFDPESVRRQFEVNAIGPLRVTHALLDHLLPGAK
HHHHHHHCCEEEEEECCCCEECCCCCCCCHHHHHHEEECCCCCHHHHHHHHHHHHCCCCE
VILMTSRMGSIDDNSSGGSYGYRMSKVALCMAGKSLAIDLKSQGIAVALLHPGLVRTRMT
EEEEECCCCCCCCCCCCCCCCHHHHHEEEEECCCEEEEEECCCCEEEEEECCCHHHHHHC
GFTAQGITPEESVDGLLARIDNLNLENSGTFWHANGEILPW
CCEECCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCEECC
>Mature Secondary Structure 
ATYLITGTNRGIGYEYCRQLHARGDVVVAACRKPSPQLEGLGVRIEAGVEITSDGSIAR
EEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCEEEECCCCHHH
LKERLRSLPIDVLIHNAGILESTNLKDFDPESVRRQFEVNAIGPLRVTHALLDHLLPGAK
HHHHHHHCCEEEEEECCCCEECCCCCCCCHHHHHHEEECCCCCHHHHHHHHHHHHCCCCE
VILMTSRMGSIDDNSSGGSYGYRMSKVALCMAGKSLAIDLKSQGIAVALLHPGLVRTRMT
EEEEECCCCCCCCCCCCCCCCHHHHHEEEEECCCEEEEEECCCCEEEEEECCCHHHHHHC
GFTAQGITPEESVDGLLARIDNLNLENSGTFWHANGEILPW
CCEECCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2152896; 2107980; 2118510; 1372277 [H]