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The map label for this gene is yqxC [H]

Identifier: 124022176

GI number: 124022176

Start: 468162

End: 468965

Strand: Direct

Name: yqxC [H]

Synonym: P9303_04661

Alternate gene names: 124022176

Gene position: 468162-468965 (Clockwise)

Preceding gene: 124022174

Following gene: 124022179

Centisome position: 17.45

GC content: 57.21

Gene sequence:

>804_bases
ATGTCCCACAAACAGCGTCTTGATCTGCAGCTGCTGATGAAGGGCTTGGCGAGTTCTCGCCATCAGGCTCAGCAGCTGAT
CCGCGCCGGCAAGGTGCGAGATGGTAATGGCCAGCTGCTTGATAAGCCTGGTCATGAGGTGTCTCAGGAGCTTGAGCTTC
AGGTTGAGCAGCCACCGAGATTCGTGTCTCGTGGCGGGGAAAAGTTGCTGGGCGCTCTGCTGGAGTTTCCTCTCAATGTT
GAGGGACGAGTGTGCCTGGATGGCGGCATCTCGACAGGAGGTTTCACCGATTGCCTGTTGCAGCATGGTGCCGCTCGGGT
TTATGGAATCGATGTGGGCTATGGCCAGACGGCCTGGGATTTGCGCAACGACCCTCGCGTGGTGCTGAGGGAGCGCACCA
ATCTGCGCACCCTCAGCCCTGATCAGCTCTACGGGGCTGAGGAGCCTTTGCCGAGCCTTGCTGTTGCTGATCTTGCCTTC
ATCTCCTTGCGGCTTGTGCTGCCTGCCATCAAGAAACTACTTAAGCCAGACCAATCAGAGGCAGTGCTGTTGGTGAAGCC
CCAGTTTGAGGTTGGGCGTGAGCGGGTGGGTAAAGGTGGAGTGGTCAGGGATGCCTTGGCCCATGTGGATGCCTTGCAGA
GCGTGATCGATACATCAAGGTCTTTGGGTTGGTGGCCCAAGGGACTTATCGCTTCTCCGATCACTGGACCGGCTGGTAAT
CATGAATACCTGCTCTGGCTGGGTGACGAGACCCTCGCAGATTTTCCAGTTCTTGAGAGACTTGTGGCTAAGACGTTGGC
CTAG

Upstream 100 bases:

>100_bases
CGTCCTGGCGGGCGAGTTGCGGTGATCTTCTCGGAAGCTTTCGCTTTTTGCGGTGGTTAAGAGGTTTTTGTTTCGTTTTC
AAGTCTGCTTTTATGACGAA

Downstream 100 bases:

>100_bases
AGGGCTTTGCTGTCACGATCACCGGTACGGATACGTACTACGGAATCCACTGGAGAGATGAAAATCTTGCCGTCACCGAT
TTCGCCTGTTTTGGCAGCTT

Product: rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MSHKQRLDLQLLMKGLASSRHQAQQLIRAGKVRDGNGQLLDKPGHEVSQELELQVEQPPRFVSRGGEKLLGALLEFPLNV
EGRVCLDGGISTGGFTDCLLQHGAARVYGIDVGYGQTAWDLRNDPRVVLRERTNLRTLSPDQLYGAEEPLPSLAVADLAF
ISLRLVLPAIKKLLKPDQSEAVLLVKPQFEVGRERVGKGGVVRDALAHVDALQSVIDTSRSLGWWPKGLIASPITGPAGN
HEYLLWLGDETLADFPVLERLVAKTLA

Sequences:

>Translated_267_residues
MSHKQRLDLQLLMKGLASSRHQAQQLIRAGKVRDGNGQLLDKPGHEVSQELELQVEQPPRFVSRGGEKLLGALLEFPLNV
EGRVCLDGGISTGGFTDCLLQHGAARVYGIDVGYGQTAWDLRNDPRVVLRERTNLRTLSPDQLYGAEEPLPSLAVADLAF
ISLRLVLPAIKKLLKPDQSEAVLLVKPQFEVGRERVGKGGVVRDALAHVDALQSVIDTSRSLGWWPKGLIASPITGPAGN
HEYLLWLGDETLADFPVLERLVAKTLA
>Mature_266_residues
SHKQRLDLQLLMKGLASSRHQAQQLIRAGKVRDGNGQLLDKPGHEVSQELELQVEQPPRFVSRGGEKLLGALLEFPLNVE
GRVCLDGGISTGGFTDCLLQHGAARVYGIDVGYGQTAWDLRNDPRVVLRERTNLRTLSPDQLYGAEEPLPSLAVADLAFI
SLRLVLPAIKKLLKPDQSEAVLLVKPQFEVGRERVGKGGVVRDALAHVDALQSVIDTSRSLGWWPKGLIASPITGPAGNH
EYLLWLGDETLADFPVLERLVAKTLA

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29180; Mature: 29049

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHKQRLDLQLLMKGLASSRHQAQQLIRAGKVRDGNGQLLDKPGHEVSQELELQVEQPPR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHEEECCCCH
FVSRGGEKLLGALLEFPLNVEGRVCLDGGISTGGFTDCLLQHGAARVYGIDVGYGQTAWD
HHHCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCC
LRNDPRVVLRERTNLRTLSPDQLYGAEEPLPSLAVADLAFISLRLVLPAIKKLLKPDQSE
CCCCCCEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AVLLVKPQFEVGRERVGKGGVVRDALAHVDALQSVIDTSRSLGWWPKGLIASPITGPAGN
EEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
HEYLLWLGDETLADFPVLERLVAKTLA
CEEEEEECCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SHKQRLDLQLLMKGLASSRHQAQQLIRAGKVRDGNGQLLDKPGHEVSQELELQVEQPPR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHEEECCCCH
FVSRGGEKLLGALLEFPLNVEGRVCLDGGISTGGFTDCLLQHGAARVYGIDVGYGQTAWD
HHHCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCC
LRNDPRVVLRERTNLRTLSPDQLYGAEEPLPSLAVADLAFISLRLVLPAIKKLLKPDQSE
CCCCCCEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AVLLVKPQFEVGRERVGKGGVVRDALAHVDALQSVIDTSRSLGWWPKGLIASPITGPAGN
EEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
HEYLLWLGDETLADFPVLERLVAKTLA
CEEEEEECCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]