| Definition | Prochlorococcus marinus str. MIT 9303, complete genome. |
|---|---|
| Accession | NC_008820 |
| Length | 2,682,675 |
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The map label for this gene is 124021930
Identifier: 124021930
GI number: 124021930
Start: 234106
End: 235047
Strand: Direct
Name: 124021930
Synonym: P9303_02171
Alternate gene names: NA
Gene position: 234106-235047 (Clockwise)
Preceding gene: 124021927
Following gene: 124021934
Centisome position: 8.73
GC content: 54.14
Gene sequence:
>942_bases ATGGGTTCGTCTCGCCTCACCAGCCGCCGCCGTCAGGATCAGGGGTTGAAGTGGCCTCGGATTGCGATGGCGGTGCTTGC CACCGTTGGGTTGATCGATACAGGGTCAATCACTCTGCATCGCTGGGGATGGATTGGATCTCTCTCTTGTCCTGGGGGGA ATGAAGGTTGCGACAAAGTTCTCAACAGCGCCTGGGGAACGCTGTTTCAGGGAGATGGCGTATCGATTCCACTTTCATTG CTGGGCTTTTTGGCCTACCTCGCCATTTTGGTGATGGCTGTGCTGCCCTTGTTGCCAGGGCTTTCAGAGAACCGAGCAGA CCTGTCCCGCCGCACATGGTGGGGGTTGTTTGCCTTCTCTTGCGGTATGGCCGTGTTCAGCCTGATTTTGATCGGGTTGA TGGTGTTCAAGATCGATGCGTTTTGTTTCTTCTGCGTTCTTTCTGCTGCCCTATCCATGGGCATGTTGGTCTTGTCGTTG ATTGGAGGAGGTTGGGATGACCCTGGAAAGTTGATTTTTCGGGGTGTTCTGCTTGCCTTGGCAGTGTTGCTCGGAGGTTT GATTTGGTCTTCGGTTGTTGATCCGAGCCGTCCTGACGTTGGTGTAGGGGGGGTAGGGGTCCCTCCAGTTGTGAAGACGA GGAGTACGCCATCTACGCTGGCTTTGGCTGAACATCTCAAAGAGACTGGTGCAGTGTTCTATAGCGCTTATTGGTGTCCT CATTGCCACGAGCAGAAGGAGATGTTTGGTGAAGAGGGCGCCGCGCAACTGCAGGTCGTTGAGTGTGCGTTAGATGGTCA GAACAGCCAAAGAGATCTGTGTGAACGCAAAGGTATTGATGCCTTCCCTACCTGGGAAATTAACGGGGAGCTCGAATCCG GCGTGAAACCGCTCAATAAGCTTGCTGATATGAGTGGCTATCAGGGCGGGAGGCAGTTCTGA
Upstream 100 bases:
>100_bases TTGATTTCTGGGCTGCCTAGGCAGTTCCCGCTAGGCGCCACCCTAAAGAGAGGGTGGCTTCTTCCAGAGCTGCCACAATT CTTAGATCTGTGTAGCCGAA
Downstream 100 bases:
>100_bases AGCAGCCAGTTAGGACCTCACTGGCCGCGTGGAGAGGTCTTCTCCTCGTTTTTGGCGTGAGTGGCGTTTCCACTGAGGCA TTGCTGCAGGGGCATCAGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 313; Mature: 312
Protein sequence:
>313_residues MGSSRLTSRRRQDQGLKWPRIAMAVLATVGLIDTGSITLHRWGWIGSLSCPGGNEGCDKVLNSAWGTLFQGDGVSIPLSL LGFLAYLAILVMAVLPLLPGLSENRADLSRRTWWGLFAFSCGMAVFSLILIGLMVFKIDAFCFFCVLSAALSMGMLVLSL IGGGWDDPGKLIFRGVLLALAVLLGGLIWSSVVDPSRPDVGVGGVGVPPVVKTRSTPSTLALAEHLKETGAVFYSAYWCP HCHEQKEMFGEEGAAQLQVVECALDGQNSQRDLCERKGIDAFPTWEINGELESGVKPLNKLADMSGYQGGRQF
Sequences:
>Translated_313_residues MGSSRLTSRRRQDQGLKWPRIAMAVLATVGLIDTGSITLHRWGWIGSLSCPGGNEGCDKVLNSAWGTLFQGDGVSIPLSL LGFLAYLAILVMAVLPLLPGLSENRADLSRRTWWGLFAFSCGMAVFSLILIGLMVFKIDAFCFFCVLSAALSMGMLVLSL IGGGWDDPGKLIFRGVLLALAVLLGGLIWSSVVDPSRPDVGVGGVGVPPVVKTRSTPSTLALAEHLKETGAVFYSAYWCP HCHEQKEMFGEEGAAQLQVVECALDGQNSQRDLCERKGIDAFPTWEINGELESGVKPLNKLADMSGYQGGRQF >Mature_312_residues GSSRLTSRRRQDQGLKWPRIAMAVLATVGLIDTGSITLHRWGWIGSLSCPGGNEGCDKVLNSAWGTLFQGDGVSIPLSLL GFLAYLAILVMAVLPLLPGLSENRADLSRRTWWGLFAFSCGMAVFSLILIGLMVFKIDAFCFFCVLSAALSMGMLVLSLI GGGWDDPGKLIFRGVLLALAVLLGGLIWSSVVDPSRPDVGVGGVGVPPVVKTRSTPSTLALAEHLKETGAVFYSAYWCPH CHEQKEMFGEEGAAQLQVVECALDGQNSQRDLCERKGIDAFPTWEINGELESGVKPLNKLADMSGYQGGRQF
Specific function: Unknown
COG id: COG4243
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33654; Mature: 33522
Theoretical pI: Translated: 6.50; Mature: 6.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSSRLTSRRRQDQGLKWPRIAMAVLATVGLIDTGSITLHRWGWIGSLSCPGGNEGCDKV CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEECCCCCCCCHHHHHH LNSAWGTLFQGDGVSIPLSLLGFLAYLAILVMAVLPLLPGLSENRADLSRRTWWGLFAFS HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH CGMAVFSLILIGLMVFKIDAFCFFCVLSAALSMGMLVLSLIGGGWDDPGKLIFRGVLLAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH AVLLGGLIWSSVVDPSRPDVGVGGVGVPPVVKTRSTPSTLALAEHLKETGAVFYSAYWCP HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC HCHEQKEMFGEEGAAQLQVVECALDGQNSQRDLCERKGIDAFPTWEINGELESGVKPLNK CHHHHHHHHCCCCCHHEEHEEEHHCCCCCHHHHHHHCCCCCCCCEEECCCHHHHHHHHHH LADMSGYQGGRQF HHHHCCCCCCCCC >Mature Secondary Structure GSSRLTSRRRQDQGLKWPRIAMAVLATVGLIDTGSITLHRWGWIGSLSCPGGNEGCDKV CCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEECCCCCCCCHHHHHH LNSAWGTLFQGDGVSIPLSLLGFLAYLAILVMAVLPLLPGLSENRADLSRRTWWGLFAFS HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH CGMAVFSLILIGLMVFKIDAFCFFCVLSAALSMGMLVLSLIGGGWDDPGKLIFRGVLLAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH AVLLGGLIWSSVVDPSRPDVGVGGVGVPPVVKTRSTPSTLALAEHLKETGAVFYSAYWCP HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC HCHEQKEMFGEEGAAQLQVVECALDGQNSQRDLCERKGIDAFPTWEINGELESGVKPLNK CHHHHHHHHCCCCCHHEEHEEEHHCCCCCHHHHHHHCCCCCCCCEEECCCHHHHHHHHHH LADMSGYQGGRQF HHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA