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The map label for this gene is ywqA [H]

Identifier: 124021752

GI number: 124021752

Start: 38191

End: 39819

Strand: Direct

Name: ywqA [H]

Synonym: P9303_00371

Alternate gene names: 124021752

Gene position: 38191-39819 (Clockwise)

Preceding gene: 124021750

Following gene: 124021755

Centisome position: 1.42

GC content: 53.96

Gene sequence:

>1629_bases
GTGAAGCTCACGCCTAAATCGTCTTCCAGCTGTTATTTGGGTCTGACTGCGGCGGGTTTGGTCAAGGTGGCGTTCCCTTT
CGATGCGGTGACTCAGGCTCAGCTTCGCAAAGTGAGGCCTCGTGGAATTTGGCGTGGTACTCGCCAGGGCTGGGAATTTC
CTTTGGTTGCGGCTCAACATTTGCAGAGGCAGTTTGGCACACGTTTTTTGGTGCAGGACGACTTGGCTCAGTGGCTGAGT
TGGTTCGAACAGCCTTTGCCACCGATGCCGCCTCATCGCGATCTCGTGAGCTATGCAGACCTTGAGGTTGTTTTGAAAGA
TGGTCGTAGACCTCTCCCTCATCAGTGCTCTGGAGCCCGTTGGTTGTTGGCGCGGCGCGGTGCAGTCTTGGCTGATGAAA
TGGGTCTTGGTAAGACTCTTACCTCTCTTTTGGCGGCTCGTGCCATGGTGAGATGTGCTGATGTACGGGTCATGGTGGTG
GCGCCGGTGGGTCTTCATGACCACTGGCGCATCGAAGCTGCAAGTCTTGATTTGCCGGTATGCATCCATAGCTGGGCTCG
TTTGCCTAGGGAATTGCCGGCGGCGGGAACGCTTCTGTTGGTGGATGAAGCGCATTTCGGCCAGTCCATCAAGTCAAGAC
GAACTCAGGCTCTTTTAAGGCTTGCGCGGCATCCGCGTTTAAGGGCTATTTGGTTACTCACCGGGACGCCGATGAAAAAT
GGTCGTCCTGATCAGCTTTATCCATTGCTGGCTGCCATTGATCATCCTTTGGCTCGAGATCAACGTAAGTTTGAAGAGCG
TTTTTGTCAGGGTCACTGGCGAGATCAAGGTGGACAGCGACGCTGGTATTCACGTGGTGCGAGTGATCTCGATGCTCTAG
GGAAGCTCACACGGCCATTGGTTCTGCATCGACGCAAGCAGACTTTGCTTAGCTTGCCCCCAAAACGTCGTCAAGAGCAT
CGGGTTGTCCTTACAGAGCCAGAGTCTCGTGGTTTTGACCATCGTCTAGCTCTTGTCACTGACAACTATCGCCATCGTGT
TCAACAGGGTTTGGTGCGTTCAGATGCGGAATCGCTGGCGGTGCTTACGGCTTTGCGCCAGATCGCAGCGGAGTTCAAGC
TGCCAGCAGTGGAGACAGTTGTGGCAGCACTTCTTGCTGAGGGGCAAGCCGTTGTCCTTTTCAGCAGTTTTGTTGGTCCT
TTGTTGCTTTTGCAGCAACGCTTAGGGGGTGAGTTGTTAACTGGTCGTCAGCGTCCAGGCCAGCGTCAGGAAGCTGTGAA
TCGTTTTCAATCAGGGCTGAGTTCTCTTTTGTTGGCAACCTATGCAGTAGGCGGGCTTGGTTACACCTTGCATCGCGCCA
GGCATGTGGTTTTGCTTGAACGTCACTGGACACCTGGTGATGTGGATCAGGCTGAGGATCGTTGCCATCGATTGGGGATG
GATGGCGGACTCACGAGTCACTGGTTCCAACTGGGTTTTGCAGATCAGCTGGTGGATGCTCTGATAGCTAGTAAGGCCGA
GCGGATTGAGGTATTGCTTGGTTCTCGTCGTGTTGGCCTCAAGCGTCAGCCTTTGCCAGTCATGTTGAGATGTTGCATGC
AGGAGTCTTTACGTACGGTTAGTTCGTGA

Upstream 100 bases:

>100_bases
CTAAATATCTATTTTGGCTTGCTTTGCGCTGCTTTTTACAGTGGTTGCTTTCGCTCTTGCTAGTAAGGCAATGGGGCGTA
AATTAGGTGTTCCTTGAGCA

Downstream 100 bases:

>100_bases
CGCACCATCGGATCAGCTGATGCTCCTTGTTGATTCAGAAGCTGTAAGCCTTTGGAGACATCTTGACAAGCCAAATTGGT
TTGGCCAAGCAGGGTGTAGA

Product: superfamily II DNA/RNA helicases, SNF2 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 542; Mature: 542

Protein sequence:

>542_residues
MKLTPKSSSSCYLGLTAAGLVKVAFPFDAVTQAQLRKVRPRGIWRGTRQGWEFPLVAAQHLQRQFGTRFLVQDDLAQWLS
WFEQPLPPMPPHRDLVSYADLEVVLKDGRRPLPHQCSGARWLLARRGAVLADEMGLGKTLTSLLAARAMVRCADVRVMVV
APVGLHDHWRIEAASLDLPVCIHSWARLPRELPAAGTLLLVDEAHFGQSIKSRRTQALLRLARHPRLRAIWLLTGTPMKN
GRPDQLYPLLAAIDHPLARDQRKFEERFCQGHWRDQGGQRRWYSRGASDLDALGKLTRPLVLHRRKQTLLSLPPKRRQEH
RVVLTEPESRGFDHRLALVTDNYRHRVQQGLVRSDAESLAVLTALRQIAAEFKLPAVETVVAALLAEGQAVVLFSSFVGP
LLLLQQRLGGELLTGRQRPGQRQEAVNRFQSGLSSLLLATYAVGGLGYTLHRARHVVLLERHWTPGDVDQAEDRCHRLGM
DGGLTSHWFQLGFADQLVDALIASKAERIEVLLGSRRVGLKRQPLPVMLRCCMQESLRTVSS

Sequences:

>Translated_542_residues
MKLTPKSSSSCYLGLTAAGLVKVAFPFDAVTQAQLRKVRPRGIWRGTRQGWEFPLVAAQHLQRQFGTRFLVQDDLAQWLS
WFEQPLPPMPPHRDLVSYADLEVVLKDGRRPLPHQCSGARWLLARRGAVLADEMGLGKTLTSLLAARAMVRCADVRVMVV
APVGLHDHWRIEAASLDLPVCIHSWARLPRELPAAGTLLLVDEAHFGQSIKSRRTQALLRLARHPRLRAIWLLTGTPMKN
GRPDQLYPLLAAIDHPLARDQRKFEERFCQGHWRDQGGQRRWYSRGASDLDALGKLTRPLVLHRRKQTLLSLPPKRRQEH
RVVLTEPESRGFDHRLALVTDNYRHRVQQGLVRSDAESLAVLTALRQIAAEFKLPAVETVVAALLAEGQAVVLFSSFVGP
LLLLQQRLGGELLTGRQRPGQRQEAVNRFQSGLSSLLLATYAVGGLGYTLHRARHVVLLERHWTPGDVDQAEDRCHRLGM
DGGLTSHWFQLGFADQLVDALIASKAERIEVLLGSRRVGLKRQPLPVMLRCCMQESLRTVSS
>Mature_542_residues
MKLTPKSSSSCYLGLTAAGLVKVAFPFDAVTQAQLRKVRPRGIWRGTRQGWEFPLVAAQHLQRQFGTRFLVQDDLAQWLS
WFEQPLPPMPPHRDLVSYADLEVVLKDGRRPLPHQCSGARWLLARRGAVLADEMGLGKTLTSLLAARAMVRCADVRVMVV
APVGLHDHWRIEAASLDLPVCIHSWARLPRELPAAGTLLLVDEAHFGQSIKSRRTQALLRLARHPRLRAIWLLTGTPMKN
GRPDQLYPLLAAIDHPLARDQRKFEERFCQGHWRDQGGQRRWYSRGASDLDALGKLTRPLVLHRRKQTLLSLPPKRRQEH
RVVLTEPESRGFDHRLALVTDNYRHRVQQGLVRSDAESLAVLTALRQIAAEFKLPAVETVVAALLAEGQAVVLFSSFVGP
LLLLQQRLGGELLTGRQRPGQRQEAVNRFQSGLSSLLLATYAVGGLGYTLHRARHVVLLERHWTPGDVDQAEDRCHRLGM
DGGLTSHWFQLGFADQLVDALIASKAERIEVLLGSRRVGLKRQPLPVMLRCCMQESLRTVSS

Specific function: Unknown

COG id: COG0553

COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI62860046, Length=454, Percent_Identity=26.2114537444934, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI187761314, Length=456, Percent_Identity=26.5350877192982, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI21071060, Length=456, Percent_Identity=26.5350877192982, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI114326455, Length=456, Percent_Identity=25.4385964912281, Blast_Score=84, Evalue=4e-16,
Organism=Homo sapiens, GI282165704, Length=456, Percent_Identity=25.4385964912281, Blast_Score=84, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI193204424, Length=483, Percent_Identity=25.2587991718427, Blast_Score=89, Evalue=7e-18,
Organism=Drosophila melanogaster, GI24666729, Length=485, Percent_Identity=24.3298969072165, Blast_Score=92, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24581780, Length=517, Percent_Identity=23.9845261121857, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR022138
- InterPro:   IPR000330 [H]

Pfam domain/function: PF12419 DUF3670; PF00271 Helicase_C; PF00176 SNF2_N [H]

EC number: NA

Molecular weight: Translated: 60917; Mature: 60917

Theoretical pI: Translated: 11.05; Mature: 11.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTPKSSSSCYLGLTAAGLVKVAFPFDAVTQAQLRKVRPRGIWRGTRQGWEFPLVAAQH
CCCCCCCCCCEEEEEHHHHHEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
LQRQFGTRFLVQDDLAQWLSWFEQPLPPMPPHRDLVSYADLEVVLKDGRRPLPHQCSGAR
HHHHHCCEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH
WLLARRGAVLADEMGLGKTLTSLLAARAMVRCADVRVMVVAPVGLHDHWRIEAASLDLPV
HHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCCEEEECCCCCHH
CIHSWARLPRELPAAGTLLLVDEAHFGQSIKSRRTQALLRLARHPRLRAIWLLTGTPMKN
HHHHHHHCHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC
GRPDQLYPLLAAIDHPLARDQRKFEERFCQGHWRDQGGQRRWYSRGASDLDALGKLTRPL
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHH
VLHRRKQTLLSLPPKRRQEHRVVLTEPESRGFDHRLALVTDNYRHRVQQGLVRSDAESLA
HHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECHHHHHHHHHHHHCCHHHHH
VLTALRQIAAEFKLPAVETVVAALLAEGQAVVLFSSFVGPLLLLQQRLGGELLTGRQRPG
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCHHHCCCCCCC
QRQEAVNRFQSGLSSLLLATYAVGGLGYTLHRARHVVLLERHWTPGDVDQAEDRCHRLGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHCCC
DGGLTSHWFQLGFADQLVDALIASKAERIEVLLGSRRVGLKRQPLPVMLRCCMQESLRTV
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
SS
CC
>Mature Secondary Structure
MKLTPKSSSSCYLGLTAAGLVKVAFPFDAVTQAQLRKVRPRGIWRGTRQGWEFPLVAAQH
CCCCCCCCCCEEEEEHHHHHEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
LQRQFGTRFLVQDDLAQWLSWFEQPLPPMPPHRDLVSYADLEVVLKDGRRPLPHQCSGAR
HHHHHCCEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH
WLLARRGAVLADEMGLGKTLTSLLAARAMVRCADVRVMVVAPVGLHDHWRIEAASLDLPV
HHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCCEEEECCCCCHH
CIHSWARLPRELPAAGTLLLVDEAHFGQSIKSRRTQALLRLARHPRLRAIWLLTGTPMKN
HHHHHHHCHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC
GRPDQLYPLLAAIDHPLARDQRKFEERFCQGHWRDQGGQRRWYSRGASDLDALGKLTRPL
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHH
VLHRRKQTLLSLPPKRRQEHRVVLTEPESRGFDHRLALVTDNYRHRVQQGLVRSDAESLA
HHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECHHHHHHHHHHHHCCHHHHH
VLTALRQIAAEFKLPAVETVVAALLAEGQAVVLFSSFVGPLLLLQQRLGGELLTGRQRPG
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCHHHCCCCCCC
QRQEAVNRFQSGLSSLLLATYAVGGLGYTLHRARHVVLLERHWTPGDVDQAEDRCHRLGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHCCC
DGGLTSHWFQLGFADQLVDALIASKAERIEVLLGSRRVGLKRQPLPVMLRCCMQESLRTV
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
SS
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 9353933 [H]