| Definition | Prochlorococcus marinus str. AS9601, complete genome. |
|---|---|
| Accession | NC_008816 |
| Length | 1,669,886 |
Click here to switch to the map view.
The map label for this gene is dnaB [H]
Identifier: 123969415
GI number: 123969415
Start: 1618192
End: 1619574
Strand: Direct
Name: dnaB [H]
Synonym: A9601_18831
Alternate gene names: 123969415
Gene position: 1618192-1619574 (Clockwise)
Preceding gene: 123969414
Following gene: 123969416
Centisome position: 96.9
GC content: 35.43
Gene sequence:
>1383_bases ATGGTTTCCGTACCTTTTCCAAATAATGGGCAAAATAAAAATTTTAAAAAGGATTTTAATAGTGAAAATGCTGGATTAGT TCCTCCTCAAAACGTTCAAGCAGAGGAAGCTGTGCTTGGAGGCATACTTCTTGATCCAGATGCGATCGGAAGAATTGCAG ACTTAATTAAACCTGAAGCTTTTTATATAAACGCCCATCAAGAGATTTATAGAACAGCATTAATGTTGCATACCCAGGGA AAGCCAACTGATTTAACATCAATGAGTGCTTGGTTAGCAGATAATGGATCACTAGAAAAAATTGGAGGAAACGGCAAACT GGTAGAACTCGTTGAAAATGTTTCCTCTACAGCTTCCATAGAACAAGTTGCTAATTTAATTAACGACAAATTCATGAGAA GGCAACTTATTAGATCTGGAAATGAAGTGGTTCAACTAGGTTTTGATCAAACTCAAGATACTAATGAAGTTCTAGACAAA GCAGAGCAAAAAATATTTGAAATCAGTCAAGAAAAACCTTCAAAAGGTCTTACTCAAGCAGCTGAAATCCTTACAAGTAC TTTCAATGAAATAGAGTCAAGATCATTAGGTACTTCAGTAGCTGGAATTCCTGTTAATTTCTACGATCTTGATGCGATGA CTCAAGGTTTTCAAAGAAGTGATTTAATAATTGTTGCTGGAAGACCTTCAATGGGGAAAACTTCAATAGTTCTTAATCTG GCTAAAAATGTTGCACAATCTCAAGATTTACCTGTGTGTGTATTTAGCCTTGAAATGAGTAAAGAACAGTTGACATATAG ACTACTCTCTATGGAAGTGGGGATCGAAAGTGGCAGGCTAAGAACAGGAAGATTACAGCAAGAAGAATGGCCATTACTCG GAGAAGGTATCAATTCATTAGGTCAATTACCAATATTCATAGATGACAAGCCTAACCTAAGTGTTCTAGAGATGAGATCT CTATGCAGAAGATTAATAGCTGAACAAAAAAAAGAACTTGGATTAATTGTGATTGATTATCTGCAGTTGATGGAAGGTTC AACCCCTGATAATAGAGTTCAAGAACTTTCACGAATAACAAGAGGTCTTAAAAGCATGGCCAGAGAATTAAAAGTCCCAG TAGTAGCTTTATCTCAGCTTAGTAGAGGGGTTGAGTCTAGAACAAATAAAAGACCAATGTTAAGCGATCTAAGAGAATCA GGATCTATTGAACAAGACGCAGATTTAGTATTAATGATTTATAGAGATGAATACTATAATCCGGAGACTGAAGATAGAGG CATTACAGAAATCATTGTCACTAAACATAGAAATGGACCCGTAGGAACTGTTAAATTATTATTTGAACCTCAATTTACGA GATTTAGGAATTTAGCTAATTAA
Upstream 100 bases:
>100_bases CCAGAAGTAAATGCAGAAGTAAATATTGAAGTAACAAGTTAATCAATTTGTTGCATTATTTTGAAAAGTAGCCAGAGTAT ATATCTAAGCAATTAAAGAT
Downstream 100 bases:
>100_bases ATCGATCCTAAAATGCAAGATCATAACTCAACAAATGAATCTTTTGACGTCATCGTTATTGGAGGAGGACATGCAGGATG CGAAGCCGCTATAACAACAG
Product: DnaB replicative helicase
Products: NA
Alternate protein names: Asp dnaB intein [H]
Number of amino acids: Translated: 460; Mature: 460
Protein sequence:
>460_residues MVSVPFPNNGQNKNFKKDFNSENAGLVPPQNVQAEEAVLGGILLDPDAIGRIADLIKPEAFYINAHQEIYRTALMLHTQG KPTDLTSMSAWLADNGSLEKIGGNGKLVELVENVSSTASIEQVANLINDKFMRRQLIRSGNEVVQLGFDQTQDTNEVLDK AEQKIFEISQEKPSKGLTQAAEILTSTFNEIESRSLGTSVAGIPVNFYDLDAMTQGFQRSDLIIVAGRPSMGKTSIVLNL AKNVAQSQDLPVCVFSLEMSKEQLTYRLLSMEVGIESGRLRTGRLQQEEWPLLGEGINSLGQLPIFIDDKPNLSVLEMRS LCRRLIAEQKKELGLIVIDYLQLMEGSTPDNRVQELSRITRGLKSMARELKVPVVALSQLSRGVESRTNKRPMLSDLRES GSIEQDADLVLMIYRDEYYNPETEDRGITEIIVTKHRNGPVGTVKLLFEPQFTRFRNLAN
Sequences:
>Translated_460_residues MVSVPFPNNGQNKNFKKDFNSENAGLVPPQNVQAEEAVLGGILLDPDAIGRIADLIKPEAFYINAHQEIYRTALMLHTQG KPTDLTSMSAWLADNGSLEKIGGNGKLVELVENVSSTASIEQVANLINDKFMRRQLIRSGNEVVQLGFDQTQDTNEVLDK AEQKIFEISQEKPSKGLTQAAEILTSTFNEIESRSLGTSVAGIPVNFYDLDAMTQGFQRSDLIIVAGRPSMGKTSIVLNL AKNVAQSQDLPVCVFSLEMSKEQLTYRLLSMEVGIESGRLRTGRLQQEEWPLLGEGINSLGQLPIFIDDKPNLSVLEMRS LCRRLIAEQKKELGLIVIDYLQLMEGSTPDNRVQELSRITRGLKSMARELKVPVVALSQLSRGVESRTNKRPMLSDLRES GSIEQDADLVLMIYRDEYYNPETEDRGITEIIVTKHRNGPVGTVKLLFEPQFTRFRNLAN >Mature_460_residues MVSVPFPNNGQNKNFKKDFNSENAGLVPPQNVQAEEAVLGGILLDPDAIGRIADLIKPEAFYINAHQEIYRTALMLHTQG KPTDLTSMSAWLADNGSLEKIGGNGKLVELVENVSSTASIEQVANLINDKFMRRQLIRSGNEVVQLGFDQTQDTNEVLDK AEQKIFEISQEKPSKGLTQAAEILTSTFNEIESRSLGTSVAGIPVNFYDLDAMTQGFQRSDLIIVAGRPSMGKTSIVLNL AKNVAQSQDLPVCVFSLEMSKEQLTYRLLSMEVGIESGRLRTGRLQQEEWPLLGEGINSLGQLPIFIDDKPNLSVLEMRS LCRRLIAEQKKELGLIVIDYLQLMEGSTPDNRVQELSRITRGLKSMARELKVPVVALSQLSRGVESRTNKRPMLSDLRES GSIEQDADLVLMIYRDEYYNPETEDRGITEIIVTKHRNGPVGTVKLLFEPQFTRFRNLAN
Specific function: The intein is an endonuclease (Potential) [H]
COG id: COG0305
COG function: function code L; Replicative DNA helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 SF4 helicase domain [H]
Homologues:
Organism=Escherichia coli, GI1790486, Length=462, Percent_Identity=42.4242424242424, Blast_Score=352, Evalue=2e-98,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR007692 - InterPro: IPR007694 - InterPro: IPR007693 - InterPro: IPR016136 - InterPro: IPR003586 - InterPro: IPR003587 - InterPro: IPR006142 - InterPro: IPR004042 - InterPro: IPR006141 [H]
Pfam domain/function: PF00772 DnaB; PF03796 DnaB_C [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 51252; Mature: 51252
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSVPFPNNGQNKNFKKDFNSENAGLVPPQNVQAEEAVLGGILLDPDAIGRIADLIKPEA CEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCEEECHHHHHHHHHHHCCCE FYINAHQEIYRTALMLHTQGKPTDLTSMSAWLADNGSLEKIGGNGKLVELVENVSSTASI EEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHH EQVANLINDKFMRRQLIRSGNEVVQLGFDQTQDTNEVLDKAEQKIFEISQEKPSKGLTQA HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH AEILTSTFNEIESRSLGTSVAGIPVNFYDLDAMTQGFQRSDLIIVAGRPSMGKTSIVLNL HHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH AKNVAQSQDLPVCVFSLEMSKEQLTYRLLSMEVGIESGRLRTGRLQQEEWPLLGEGINSL HHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH GQLPIFIDDKPNLSVLEMRSLCRRLIAEQKKELGLIVIDYLQLMEGSTPDNRVQELSRIT CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHH RGLKSMARELKVPVVALSQLSRGVESRTNKRPMLSDLRESGSIEQDADLVLMIYRDEYYN HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCC PETEDRGITEIIVTKHRNGPVGTVKLLFEPQFTRFRNLAN CCCCCCCCEEEEEEECCCCCCEEEEEEECCCHHHHHCCCC >Mature Secondary Structure MVSVPFPNNGQNKNFKKDFNSENAGLVPPQNVQAEEAVLGGILLDPDAIGRIADLIKPEA CEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCEEECHHHHHHHHHHHCCCE FYINAHQEIYRTALMLHTQGKPTDLTSMSAWLADNGSLEKIGGNGKLVELVENVSSTASI EEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHH EQVANLINDKFMRRQLIRSGNEVVQLGFDQTQDTNEVLDKAEQKIFEISQEKPSKGLTQA HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH AEILTSTFNEIESRSLGTSVAGIPVNFYDLDAMTQGFQRSDLIIVAGRPSMGKTSIVLNL HHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH AKNVAQSQDLPVCVFSLEMSKEQLTYRLLSMEVGIESGRLRTGRLQQEEWPLLGEGINSL HHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH GQLPIFIDDKPNLSVLEMRSLCRRLIAEQKKELGLIVIDYLQLMEGSTPDNRVQELSRIT CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHH RGLKSMARELKVPVVALSQLSRGVESRTNKRPMLSDLRESGSIEQDADLVLMIYRDEYYN HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCC PETEDRGITEIIVTKHRNGPVGTVKLLFEPQFTRFRNLAN CCCCCCCCEEEEEEECCCCCCEEEEEEECCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]