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The map label for this gene is tatD [C]

Identifier: 123969222

GI number: 123969222

Start: 1433727

End: 1434521

Strand: Reverse

Name: tatD [C]

Synonym: A9601_16901

Alternate gene names: 123969222

Gene position: 1434521-1433727 (Counterclockwise)

Preceding gene: 123969223

Following gene: 123969221

Centisome position: 85.91

GC content: 32.58

Gene sequence:

>795_bases
ATGAGCGATATAAAACTCATAGACTCACACTGTCATTTAATATTTGAAAATTTTGAGAAAGATCTTGAAGAGGTTATTTT
AAGATTGCGTTCAAGAGGTGTAAAAAAATTAGTGCATGCTTGTTGTGAATTATCAGAAATCCCAAAGTTGAAAAAAATAT
CTCATGAATTTAATGAAATTTACTATTCAGTTGGTTTGCATCCGTTAGAGGCAAAAAAGTGGGAAGAAAGCTCAAAATCT
CTCTTAAGAAAATCAGCTCAAGAAGATAAGAGAGTTGTAGCTATTGGCGAATTAGGCTTGGATTTTTTTAAGAATGAAAA
TAAAACTCAGCAAATTGAAGCACTTATTCCTCAAATGGAGTTAGCTTATGAACTTAAATTGCCTGTAATTATTCACTGTA
GAGATGCTGCAAATGAAATGATTGAGATATGTAGTGATCTCTCTAAAAAAGGAAAATGCCCTGATGGCGTACTTCATTGT
TGGACAGGAACCCGAGAAGAAATGCAGCAATTCTTGGATCTTGGATTTTACATAAGTTTTAGTGGAATAGTAACTTTCCC
AAAAGCACATAAAATTCATGAGTGTGCCAAATTAGTCCCAAATAATAAATACCTTATTGAAACTGACTCACCATTTTTAG
CTCCTGTACCTCACAGAGGTAAAAGGAATGAACCTGCATTTGTTGAAAATGTTGCCAATTTTATGGCAGATTTAAGATCT
ACTGAATTAATCACAATTGCTAAAGAGTCTTCTAAGAATGCTGAAGATTTGTTTAAATTTGACTTGTTATTTTGA

Upstream 100 bases:

>100_bases
AAAATGTTCTTCACAAGAATAATGGCGCTAATAGAAAATCAAAAATTAACAATTTTGTAAAAACTACTCTTACCACAAAG
TAAATAGGTAGTTCCTAATT

Downstream 100 bases:

>100_bases
CGTAGCAGCTGTTATTATTAAAAATTACTGGAAATTTTTCTTAATTTTTTAGCTTTAACGCACTCCAATTAATGATTATC
AGTATTAGACAAATTCTAAT

Product: TatD family deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MSDIKLIDSHCHLIFENFEKDLEEVILRLRSRGVKKLVHACCELSEIPKLKKISHEFNEIYYSVGLHPLEAKKWEESSKS
LLRKSAQEDKRVVAIGELGLDFFKNENKTQQIEALIPQMELAYELKLPVIIHCRDAANEMIEICSDLSKKGKCPDGVLHC
WTGTREEMQQFLDLGFYISFSGIVTFPKAHKIHECAKLVPNNKYLIETDSPFLAPVPHRGKRNEPAFVENVANFMADLRS
TELITIAKESSKNAEDLFKFDLLF

Sequences:

>Translated_264_residues
MSDIKLIDSHCHLIFENFEKDLEEVILRLRSRGVKKLVHACCELSEIPKLKKISHEFNEIYYSVGLHPLEAKKWEESSKS
LLRKSAQEDKRVVAIGELGLDFFKNENKTQQIEALIPQMELAYELKLPVIIHCRDAANEMIEICSDLSKKGKCPDGVLHC
WTGTREEMQQFLDLGFYISFSGIVTFPKAHKIHECAKLVPNNKYLIETDSPFLAPVPHRGKRNEPAFVENVANFMADLRS
TELITIAKESSKNAEDLFKFDLLF
>Mature_263_residues
SDIKLIDSHCHLIFENFEKDLEEVILRLRSRGVKKLVHACCELSEIPKLKKISHEFNEIYYSVGLHPLEAKKWEESSKSL
LRKSAQEDKRVVAIGELGLDFFKNENKTQQIEALIPQMELAYELKLPVIIHCRDAANEMIEICSDLSKKGKCPDGVLHCW
TGTREEMQQFLDLGFYISFSGIVTFPKAHKIHECAKLVPNNKYLIETDSPFLAPVPHRGKRNEPAFVENVANFMADLRST
ELITIAKESSKNAEDLFKFDLLF

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=287, Percent_Identity=27.8745644599303, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI110349730, Length=270, Percent_Identity=27.037037037037, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI110349734, Length=270, Percent_Identity=27.4074074074074, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI225903439, Length=231, Percent_Identity=29.004329004329, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI226061853, Length=278, Percent_Identity=28.0575539568345, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI226061614, Length=263, Percent_Identity=26.615969581749, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI226061595, Length=235, Percent_Identity=28.936170212766, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI225903424, Length=226, Percent_Identity=26.9911504424779, Blast_Score=77, Evalue=2e-14,
Organism=Escherichia coli, GI1787342, Length=260, Percent_Identity=40.7692307692308, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI48994985, Length=260, Percent_Identity=32.3076923076923, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI87082439, Length=256, Percent_Identity=28.125, Blast_Score=122, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17559024, Length=296, Percent_Identity=27.7027027027027, Blast_Score=120, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI71980746, Length=266, Percent_Identity=28.9473684210526, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI221330018, Length=222, Percent_Identity=30.1801801801802, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24586117, Length=222, Percent_Identity=30.1801801801802, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24648690, Length=290, Percent_Identity=30, Blast_Score=94, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30294; Mature: 30163

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDIKLIDSHCHLIFENFEKDLEEVILRLRSRGVKKLVHACCELSEIPKLKKISHEFNEI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
YYSVGLHPLEAKKWEESSKSLLRKSAQEDKRVVAIGELGLDFFKNENKTQQIEALIPQME
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHH
LAYELKLPVIIHCRDAANEMIEICSDLSKKGKCPDGVLHCWTGTREEMQQFLDLGFYISF
HHHEECCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHCCEEEE
SGIVTFPKAHKIHECAKLVPNNKYLIETDSPFLAPVPHRGKRNEPAFVENVANFMADLRS
CCEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
TELITIAKESSKNAEDLFKFDLLF
CEEEEEECCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
SDIKLIDSHCHLIFENFEKDLEEVILRLRSRGVKKLVHACCELSEIPKLKKISHEFNEI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
YYSVGLHPLEAKKWEESSKSLLRKSAQEDKRVVAIGELGLDFFKNENKTQQIEALIPQME
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHH
LAYELKLPVIIHCRDAANEMIEICSDLSKKGKCPDGVLHCWTGTREEMQQFLDLGFYISF
HHHEECCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHCCEEEE
SGIVTFPKAHKIHECAKLVPNNKYLIETDSPFLAPVPHRGKRNEPAFVENVANFMADLRS
CCEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
TELITIAKESSKNAEDLFKFDLLF
CEEEEEECCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]