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The map label for this gene is ccdA

Identifier: 123969193

GI number: 123969193

Start: 1403598

End: 1404254

Strand: Direct

Name: ccdA

Synonym: A9601_16611

Alternate gene names: NA

Gene position: 1403598-1404254 (Clockwise)

Preceding gene: 123969192

Following gene: 123969194

Centisome position: 84.05

GC content: 35.31

Gene sequence:

>657_bases
ATGCAGAATGGCATTAATAATCCTGGCCCATTTACTATATTTTTGATTTTCAGCGCAGGACTTTTAACGAGTCTTGGTCC
ATGCTCATTATCATTACTACCAATCACTATTGCTTATATAGGAGGAACAGAGAAAAAACAATTTAAACTTATTAGTTTTT
CAGGAGGAGTCGTTTTTTCCCTCGTTGCACTTGGTGCTGCCAGTGGATTATTAGGTAGGATATATGGGCAAATCCCATCT
TATTACACTTCGATTGTTGCCTTGATAGCAATAATAATGGGTTTGAATTTACTAGGAATTTTAAAGTTTCAGTTCCCGAA
TGGACCTGATCTACAAAAAATAGAGGATAAGATACCATCCCTCATGGCACCTTTTGCGATAGGAACTACTTTTGGATTAG
CCTCTTCACCTTGCATTACTCCAGTTTTAGCAACTCTTCTAGCTTGGGTATCGCAAGCTAAAAACCCGATAATCTCAATT
ATTTTTTTATTTTTCTTTGGAATAGGCCAAGTCACTCCACTAATTATTGCGGGTGCCACGGCAGAAAACTTAAAAAAATT
TTTAGAGCTTAGAAAATTTAGTCAAATAATTCCCACCTTAAGCGGGATATTTTTAGTAGCACTAGGATTATTAAATTTAT
TTTCAAATTGGATTTAA

Upstream 100 bases:

>100_bases
CGAAAGACTCTTAATTAGTTAGAATTTAAATTATTTAAGTCAAGCTATCGAATCATTTAATTTAGTTATTTCAGAATTAT
CTCAAAAGGGATATCTGCTT

Downstream 100 bases:

>100_bases
ATGATTATTTTTAAGAATCTAATTTTAAAAATATCTAGTTTAAGATTTGCAATATCACTGATAATCTTCATAGCTATTGC
CAGTGGAATAGGTACTTTTA

Product: putative c-type cytochrome biogenesis protein CcdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MQNGINNPGPFTIFLIFSAGLLTSLGPCSLSLLPITIAYIGGTEKKQFKLISFSGGVVFSLVALGAASGLLGRIYGQIPS
YYTSIVALIAIIMGLNLLGILKFQFPNGPDLQKIEDKIPSLMAPFAIGTTFGLASSPCITPVLATLLAWVSQAKNPIISI
IFLFFFGIGQVTPLIIAGATAENLKKFLELRKFSQIIPTLSGIFLVALGLLNLFSNWI

Sequences:

>Translated_218_residues
MQNGINNPGPFTIFLIFSAGLLTSLGPCSLSLLPITIAYIGGTEKKQFKLISFSGGVVFSLVALGAASGLLGRIYGQIPS
YYTSIVALIAIIMGLNLLGILKFQFPNGPDLQKIEDKIPSLMAPFAIGTTFGLASSPCITPVLATLLAWVSQAKNPIISI
IFLFFFGIGQVTPLIIAGATAENLKKFLELRKFSQIIPTLSGIFLVALGLLNLFSNWI
>Mature_218_residues
MQNGINNPGPFTIFLIFSAGLLTSLGPCSLSLLPITIAYIGGTEKKQFKLISFSGGVVFSLVALGAASGLLGRIYGQIPS
YYTSIVALIAIIMGLNLLGILKFQFPNGPDLQKIEDKIPSLMAPFAIGTTFGLASSPCITPVLATLLAWVSQAKNPIISI
IFLFFFGIGQVTPLIIAGATAENLKKFLELRKFSQIIPTLSGIFLVALGLLNLFSNWI

Specific function: Could be involved in cytochrome c synthesis [H]

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DsbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003834 [H]

Pfam domain/function: PF02683 DsbD [H]

EC number: NA

Molecular weight: Translated: 23211; Mature: 23211

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNGINNPGPFTIFLIFSAGLLTSLGPCSLSLLPITIAYIGGTEKKQFKLISFSGGVVFS
CCCCCCCCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHEEEEEECCHHHHH
LVALGAASGLLGRIYGQIPSYYTSIVALIAIIMGLNLLGILKFQFPNGPDLQKIEDKIPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHH
LMAPFAIGTTFGLASSPCITPVLATLLAWVSQAKNPIISIIFLFFFGIGQVTPLIIAGAT
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCC
AENLKKFLELRKFSQIIPTLSGIFLVALGLLNLFSNWI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQNGINNPGPFTIFLIFSAGLLTSLGPCSLSLLPITIAYIGGTEKKQFKLISFSGGVVFS
CCCCCCCCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHEEEEEECCHHHHH
LVALGAASGLLGRIYGQIPSYYTSIVALIAIIMGLNLLGILKFQFPNGPDLQKIEDKIPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHH
LMAPFAIGTTFGLASSPCITPVLATLLAWVSQAKNPIISIIFLFFFGIGQVTPLIIAGAT
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCC
AENLKKFLELRKFSQIIPTLSGIFLVALGLLNLFSNWI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]