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The map label for this gene is atpD [H]

Identifier: 123969172

GI number: 123969172

Start: 1386054

End: 1387514

Strand: Direct

Name: atpD [H]

Synonym: A9601_16401

Alternate gene names: 123969172

Gene position: 1386054-1387514 (Clockwise)

Preceding gene: 123969169

Following gene: 123969173

Centisome position: 83.0

GC content: 39.36

Gene sequence:

>1461_bases
ATGGTAGCAACTCCATCAATTTCTTCACAAACAAAAGGCGTAGTACGTCAGGTAATTGGCCCAGTTCTAGATGTAGAATT
TCCAGCTGGTAAATTACCCAAAATATTAAATGCTTTAAGGATTGAAGCTAAAAATCCTGCGGGACAAGATATAGCGCTTA
CTGCAGAGGTCCAACAGCTCCTAGGTGACCACAGAGTAAGAGCAGTTGCAATGAGTGGCACAGACGGCCTTGTAAGGGGC
ATGGAAGCAATCGACACAGGTGCACCAATATCAGTACCTGTGGGAGAGGCAACTTTAGGAAGAATATTTAATGTTTTAGG
AGAGCCAGTAGATGAACAAGGTCCAGTAAATACTAAAGATACTGCTCCAATTCATAGAGCTGCTCCAAAGTTAACCGACC
TAGAAACCAAGCCAAAAGTTTTTGAAACTGGTATTAAAGTTATTGACCTTTTAGCTCCTTATAGACAAGGAGGAAAAGTT
GGATTATTCGGAGGCGCTGGTGTTGGGAAAACGGTTCTTATTCAAGAATTGATCAATAATATCGCAAAAGAACATGGTGG
GGTTTCTGTATTTGGTGGCGTAGGGGAAAGAACTAGAGAGGGGAACGATTTATACGAAGAATTTAAAGAATCAGGCGTTA
TCAATGCAGATGATTTAACTCAATCAAAAGTTGCCTTATGTTTTGGACAGATGAATGAGCCACCTGGTGCAAGAATGAGA
GTAGGCTTATCAGCACTTACAATGGCAGAACATTTTAGAGATGTAAATAAACAAGACGTTCTACTTTTTGTTGATAACAT
TTTTAGATTCGTTCAAGCTGGCTCTGAAGTATCTGCATTACTTGGAAGAATGCCTTCAGCTGTTGGATACCAACCAACTC
TTGGAACTGATGTTGGTGAACTGCAAGAAAGGATTACATCTACATTAGAAGGGTCAATAACATCTATCCAGGCTGTATAC
GTACCTGCAGATGACCTAACAGACCCTGCTCCAGCTACAACATTTGCCCATTTAGATGCTACCACTGTGCTTGCCAGAGC
TCTTGCAGCTAAGGGAATTTATCCAGCAGTAGATCCACTAGACTCAACAAGCACTATGCTACAACCATCAGTTGTTGGCG
ATGAGCATTACAAAACAGCCAGAGCTGTACAATCAACTTTACAAAGATACAAAGAACTTCAAGACATTATTGCAATTCTC
GGTTTAGATGAGCTTTCTGAAGAAGATAGATTAACAGTTGACAGGGCCAGAAAAATTGAAAAATTCCTTTCACAACCTTT
CTTTGTTGCAGAAATATTTACAGGAATGTCTGGTAAATACGTAAAATTAGAAGATACCATTGCTGGTTTCAATATGATTT
TGTCAGGTGAGTTGGATGATTTACCAGAACAGGCATTTTACTTAGTTGGGAATATTGATGAAGTTAAAGCAAAGGCTGAA
AAAATAAAATCAGAAAAATAA

Upstream 100 bases:

>100_bases
GCGGGTGGCCGAACCCATTTAACGAATCTACCCGCGAGGTGGTAGTATTTTCGGATTATGCGCTGTTTAAAATCAGCTAT
TCACCACCAATCAATAAAAA

Downstream 100 bases:

>100_bases
ATATTTGAACATATATATTTAACCTTCAATAATTTTAAATTAATGGCAATCTCTTTAAAAGTTTTAGCTCCTAATAAAAA
TGTTTATCAAGGCGAAGCTG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 486; Mature: 486

Protein sequence:

>486_residues
MVATPSISSQTKGVVRQVIGPVLDVEFPAGKLPKILNALRIEAKNPAGQDIALTAEVQQLLGDHRVRAVAMSGTDGLVRG
MEAIDTGAPISVPVGEATLGRIFNVLGEPVDEQGPVNTKDTAPIHRAAPKLTDLETKPKVFETGIKVIDLLAPYRQGGKV
GLFGGAGVGKTVLIQELINNIAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINADDLTQSKVALCFGQMNEPPGARMR
VGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGELQERITSTLEGSITSIQAVY
VPADDLTDPAPATTFAHLDATTVLARALAAKGIYPAVDPLDSTSTMLQPSVVGDEHYKTARAVQSTLQRYKELQDIIAIL
GLDELSEEDRLTVDRARKIEKFLSQPFFVAEIFTGMSGKYVKLEDTIAGFNMILSGELDDLPEQAFYLVGNIDEVKAKAE
KIKSEK

Sequences:

>Translated_486_residues
MVATPSISSQTKGVVRQVIGPVLDVEFPAGKLPKILNALRIEAKNPAGQDIALTAEVQQLLGDHRVRAVAMSGTDGLVRG
MEAIDTGAPISVPVGEATLGRIFNVLGEPVDEQGPVNTKDTAPIHRAAPKLTDLETKPKVFETGIKVIDLLAPYRQGGKV
GLFGGAGVGKTVLIQELINNIAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINADDLTQSKVALCFGQMNEPPGARMR
VGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGELQERITSTLEGSITSIQAVY
VPADDLTDPAPATTFAHLDATTVLARALAAKGIYPAVDPLDSTSTMLQPSVVGDEHYKTARAVQSTLQRYKELQDIIAIL
GLDELSEEDRLTVDRARKIEKFLSQPFFVAEIFTGMSGKYVKLEDTIAGFNMILSGELDDLPEQAFYLVGNIDEVKAKAE
KIKSEK
>Mature_486_residues
MVATPSISSQTKGVVRQVIGPVLDVEFPAGKLPKILNALRIEAKNPAGQDIALTAEVQQLLGDHRVRAVAMSGTDGLVRG
MEAIDTGAPISVPVGEATLGRIFNVLGEPVDEQGPVNTKDTAPIHRAAPKLTDLETKPKVFETGIKVIDLLAPYRQGGKV
GLFGGAGVGKTVLIQELINNIAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINADDLTQSKVALCFGQMNEPPGARMR
VGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGELQERITSTLEGSITSIQAVY
VPADDLTDPAPATTFAHLDATTVLARALAAKGIYPAVDPLDSTSTMLQPSVVGDEHYKTARAVQSTLQRYKELQDIIAIL
GLDELSEEDRLTVDRARKIEKFLSQPFFVAEIFTGMSGKYVKLEDTIAGFNMILSGELDDLPEQAFYLVGNIDEVKAKAE
KIKSEK

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=473, Percent_Identity=68.0761099365751, Blast_Score=649, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=302, Percent_Identity=29.1390728476821, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI19913426, Length=398, Percent_Identity=26.3819095477387, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI19913428, Length=364, Percent_Identity=26.0989010989011, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI50345984, Length=411, Percent_Identity=25.3041362530414, Blast_Score=83, Evalue=7e-16,
Organism=Homo sapiens, GI4757810, Length=411, Percent_Identity=25.3041362530414, Blast_Score=83, Evalue=7e-16,
Organism=Escherichia coli, GI1790170, Length=470, Percent_Identity=64.8936170212766, Blast_Score=602, Evalue=1e-173,
Organism=Escherichia coli, GI1788251, Length=348, Percent_Identity=30.1724137931034, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1790172, Length=389, Percent_Identity=23.9074550128535, Blast_Score=96, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI25144756, Length=484, Percent_Identity=64.6694214876033, Blast_Score=629, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17510931, Length=455, Percent_Identity=25.9340659340659, Blast_Score=112, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI17570191, Length=368, Percent_Identity=26.3586956521739, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17565854, Length=302, Percent_Identity=28.476821192053, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71988080, Length=306, Percent_Identity=24.5098039215686, Blast_Score=83, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71988063, Length=306, Percent_Identity=24.5098039215686, Blast_Score=83, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6322581, Length=475, Percent_Identity=66.5263157894737, Blast_Score=637, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=403, Percent_Identity=26.302729528536, Blast_Score=108, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6319370, Length=393, Percent_Identity=24.9363867684478, Blast_Score=84, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6320016, Length=254, Percent_Identity=25.9842519685039, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24638766, Length=474, Percent_Identity=66.4556962025316, Blast_Score=635, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=475, Percent_Identity=66.5263157894737, Blast_Score=619, Evalue=1e-177,
Organism=Drosophila melanogaster, GI20129479, Length=431, Percent_Identity=27.1461716937355, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24583992, Length=322, Percent_Identity=28.5714285714286, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI281361666, Length=418, Percent_Identity=26.7942583732057, Blast_Score=112, Evalue=7e-25,
Organism=Drosophila melanogaster, GI24646341, Length=418, Percent_Identity=26.7942583732057, Blast_Score=112, Evalue=7e-25,
Organism=Drosophila melanogaster, GI17136796, Length=418, Percent_Identity=26.7942583732057, Blast_Score=112, Evalue=7e-25,
Organism=Drosophila melanogaster, GI24583988, Length=302, Percent_Identity=29.1390728476821, Blast_Score=111, Evalue=9e-25,
Organism=Drosophila melanogaster, GI24583986, Length=302, Percent_Identity=29.1390728476821, Blast_Score=111, Evalue=9e-25,
Organism=Drosophila melanogaster, GI24583984, Length=302, Percent_Identity=29.1390728476821, Blast_Score=111, Evalue=9e-25,
Organism=Drosophila melanogaster, GI24638768, Length=97, Percent_Identity=50.5154639175258, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24658560, Length=411, Percent_Identity=24.5742092457421, Blast_Score=86, Evalue=5e-17,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 52183; Mature: 52183

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVATPSISSQTKGVVRQVIGPVLDVEFPAGKLPKILNALRIEAKNPAGQDIALTAEVQQL
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEHHHHHHH
LGDHRVRAVAMSGTDGLVRGMEAIDTGAPISVPVGEATLGRIFNVLGEPVDEQGPVNTKD
HCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
TAPIHRAAPKLTDLETKPKVFETGIKVIDLLAPYRQGGKVGLFGGAGVGKTVLIQELINN
CCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
IAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINADDLTQSKVALCFGQMNEPPGARMR
HHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEE
VGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGE
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHH
LQERITSTLEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLARALAAKGIYPAVDPL
HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
DSTSTMLQPSVVGDEHYKTARAVQSTLQRYKELQDIIAILGLDELSEEDRLTVDRARKIE
CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHH
KFLSQPFFVAEIFTGMSGKYVKLEDTIAGFNMILSGELDDLPEQAFYLVGNIDEVKAKAE
HHHCCCHHHHHHHHCCCCCEEEEHHHHCCCCEEEECCCCCCCHHHEEHHCCHHHHHHHHH
KIKSEK
HHCCCC
>Mature Secondary Structure
MVATPSISSQTKGVVRQVIGPVLDVEFPAGKLPKILNALRIEAKNPAGQDIALTAEVQQL
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEHHHHHHH
LGDHRVRAVAMSGTDGLVRGMEAIDTGAPISVPVGEATLGRIFNVLGEPVDEQGPVNTKD
HCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
TAPIHRAAPKLTDLETKPKVFETGIKVIDLLAPYRQGGKVGLFGGAGVGKTVLIQELINN
CCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
IAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINADDLTQSKVALCFGQMNEPPGARMR
HHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEE
VGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGE
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHH
LQERITSTLEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLARALAAKGIYPAVDPL
HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
DSTSTMLQPSVVGDEHYKTARAVQSTLQRYKELQDIIAILGLDELSEEDRLTVDRARKIE
CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHH
KFLSQPFFVAEIFTGMSGKYVKLEDTIAGFNMILSGELDDLPEQAFYLVGNIDEVKAKAE
HHHCCCHHHHHHHHCCCCCEEEEHHHHCCCCEEEECCCCCCCHHHEEHHCCHHHHHHHHH
KIKSEK
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA